Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.7e-305 1050.0 509 100.0
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.7e-305 1050.0 509 100.0
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-296 1021.9 509 97.4
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-296 1021.9 509 97.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.5e-244 848.6 514 78.6
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 4.1e-239 831.2 523 77.8
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 7.6e-233 810.4 515 76.3
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.4e-231 805.4 513 76.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.4e-231 804.3 512 77.3
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.9e-223 779.2 517 72.3
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 3.2e-223 778.5 524 72.1
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.0e-221 773.5 526 70.7
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 3.0e-221 771.9 526 70.9
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.1e-220 770.0 518 71.4
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 9.6e-220 766.9 516 72.3
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.4e-215 752.3 525 69.5
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.5e-214 748.4 515 70.3
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.8e-213 746.1 523 72.1
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 2.3e-213 745.7 525 68.8
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.7e-211 738.4 546 66.3
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 3.7e-211 738.4 546 66.3
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.4e-210 735.7 515 68.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.1e-210 735.3 529 68.4
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.1e-210 735.3 529 68.4
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.2e-209 733.4 509 71.5
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 5.8e-209 731.1 512 68.6
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.6e-209 730.7 510 71.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.1e-207 726.9 509 68.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 4.6e-206 721.5 505 71.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 4.6e-206 721.5 504 70.4
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 7.9e-206 720.7 514 68.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.0e-205 718.8 510 69.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.0e-205 718.8 517 69.1
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 6.7e-205 717.6 529 67.3
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.7e-205 717.6 505 69.3
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 8.7e-205 717.2 506 69.4
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 8.7e-205 717.2 512 69.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.5e-204 716.5 506 69.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.5e-204 715.7 523 66.9
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.3e-204 714.9 506 69.2
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-203 713.4 509 69.0
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.6e-203 713.0 510 70.6
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.4e-202 709.1 517 67.9
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 6.9e-202 707.6 509 68.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 6.9e-202 707.6 516 66.5
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.0e-201 706.1 515 67.6
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 4.5e-201 704.9 501 69.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 7.6e-201 704.1 507 68.0
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 6.5e-200 701.0 506 69.6
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 4.2e-199 698.4 510 66.5
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 7.2e-199 697.6 510 66.3
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.1e-198 696.0 505 67.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 4.6e-198 694.9 509 67.8
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.1e-198 694.5 512 68.6
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.0e-197 693.7 517 67.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.0e-197 692.2 532 64.1
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 6.7e-197 691.0 515 66.6
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 6.7e-197 691.0 505 67.3
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.9e-196 689.5 505 68.7
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.8e-195 685.6 516 66.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-194 683.7 512 67.4
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.8e-194 682.9 509 66.4
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 9.1e-194 680.6 505 65.7
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.3e-192 676.8 519 65.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.7e-192 676.4 510 65.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.0e-192 674.9 515 67.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 6.5e-192 674.5 501 66.1
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 8.5e-192 674.1 506 65.4
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.2e-191 671.0 504 66.7
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.2e-190 670.2 506 66.2
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.6e-190 669.8 532 62.0
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.7e-190 669.1 512 65.2
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 6.1e-190 667.9 520 65.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.8e-189 666.4 504 65.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.1e-189 664.8 521 65.5
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 3.3e-188 662.1 524 62.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 5.7e-188 661.4 527 62.6
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.7e-187 659.8 520 63.5
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.7e-187 659.8 534 62.5
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.2e-187 659.4 528 63.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.3e-187 657.9 512 63.1
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.1e-186 655.6 512 63.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 5.3e-186 654.8 534 63.3
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 9.1e-186 654.1 524 62.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.5e-185 653.3 522 63.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.0e-185 652.9 524 62.2
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.6e-185 652.5 512 62.5
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.0e-184 648.3 536 61.6
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 5.0e-184 648.3 543 60.8
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 8.5e-184 647.5 539 61.4
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.4e-183 646.7 530 62.3
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 4.2e-183 645.2 535 61.9
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.7e-182 642.5 505 64.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 3.3e-180 635.6 518 61.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.3e-179 633.6 503 61.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.8e-179 632.5 493 60.9
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.4e-178 629.4 446 70.9
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.2e-177 627.1 511 61.8
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 2.9e-176 622.5 523 60.4
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 5.5e-175 618.2 512 61.3
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 3.6e-174 615.5 514 60.5
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 4.7e-174 615.1 506 59.3
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.0e-173 614.0 510 62.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.4e-170 603.6 401 70.3
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.8e-170 603.2 455 65.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.6e-169 600.1 475 62.1
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.3e-168 597.0 481 61.5
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.8e-165 586.6 470 62.8
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.3e-165 586.3 395 72.2
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.0e-160 570.9 433 61.7
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.2e-153 547.4 311 82.0
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 8.0e-150 534.6 496 56.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-149 534.3 467 58.5
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.7e-147 526.9 382 65.4
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.4e-146 523.9 291 84.9
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.4e-141 507.3 311 76.2
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.9e-139 499.6 303 78.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.3e-133 479.9 311 71.1
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 2.2e-123 446.8 468 47.2
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 8.7e-120 434.9 382 57.3
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-119 434.5 288 70.5
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.6e-116 423.3 452 45.8
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.6e-113 414.1 240 82.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.9e-111 407.1 238 82.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.6e-110 404.1 408 48.5
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.8e-110 402.5 239 79.9
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 7.4e-95 352.1 527 42.9
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.2e-86 323.9 339 52.8
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.4e-85 321.2 196 78.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 7.7e-84 315.5 316 53.2
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 5.1e-80 302.8 200 69.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 4.3e-79 299.7 237 61.6
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.7e-70 270.0 272 55.1
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 7.0e-69 265.8 166 78.3
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 6.1e-57 226.1 211 56.9
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 4.0e-56 223.4 211 55.9
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-53 215.3 218 54.1
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.3e-51 208.4 212 51.4
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.5e-50 204.9 155 61.9
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.5e-50 204.9 155 61.9
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.7e-49 200.7 124 71.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-47 193.0 427 30.2
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 7.5e-47 192.6 180 52.8
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 9.1e-45 185.7 154 59.1
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.3e-43 181.0 109 81.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.8e-38 164.1 106 67.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.8e-37 161.4 164 50.6
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 6.6e-35 152.9 174 48.9
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 2.8e-33 147.5 288 35.1
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 8.9e-32 142.5 98 73.5
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 3.4e-31 140.6 259 36.7
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 3.4e-31 140.6 156 45.5
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 5.8e-31 139.8 166 45.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 5.4e-29 133.3 79 73.4
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 5.4e-29 133.3 79 73.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.7e-28 131.0 264 36.0
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.1e-26 125.6 102 63.7
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.6e-25 121.7 85 63.5
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 5.2e-24 116.7 98 57.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-17 95.1 59 71.2
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-16 91.7 74 63.5
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 3.1e-16 90.9 88 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 7.3e-10 69.7 167 30.5
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.4e-07 60.5 34 88.2


User provided reference genes

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