Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 5.6e-29 130.2 63 100.0
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 5.7e-21 103.6 58 79.3
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.1e-20 101.7 58 82.8
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 8.2e-20 99.8 57 78.9
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 8.2e-20 99.8 57 78.9
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 1.2e-18 95.9 51 86.3
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 2.0e-18 95.1 51 86.3
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 7.6e-18 93.2 61 72.1
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 7.6e-18 93.2 62 64.5
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 1.0e-17 92.8 52 80.8
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 1.3e-17 92.4 53 77.4
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 3.8e-17 90.9 52 76.9
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 5.0e-17 90.5 62 71.0
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 5.0e-17 90.5 49 81.6
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 6.5e-17 90.1 53 75.5
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 6.5e-17 90.1 60 73.3
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 8.5e-17 89.7 52 75.0
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 1.4e-16 89.0 49 81.6
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 1.4e-16 89.0 52 75.0
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 3.2e-16 87.8 48 81.2
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 3.2e-16 87.8 52 75.0
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 3.2e-16 87.8 49 81.6
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 4.2e-16 87.4 51 74.5
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 4.2e-16 87.4 51 74.5
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 5.5e-16 87.0 54 74.1
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 7.2e-16 86.7 51 74.5
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 1.2e-15 85.9 52 67.3
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 1.2e-15 85.9 48 79.2
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 1.6e-15 85.5 52 76.9
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 1.6e-15 85.5 52 76.9
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 1.6e-15 85.5 52 76.9
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 1.6e-15 85.5 50 72.0
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 2.7e-15 84.7 52 75.0
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 3.6e-15 84.3 52 67.3
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 4.6e-15 84.0 49 79.6
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 4.6e-15 84.0 50 80.0
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 6.1e-15 83.6 50 70.0
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 6.1e-15 83.6 47 78.7
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 6.1e-15 83.6 58 63.8
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 7.9e-15 83.2 50 74.0
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 7.9e-15 83.2 51 76.5
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 1.0e-14 82.8 54 70.4
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 1.0e-14 82.8 49 73.5
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 1.3e-14 82.4 50 68.0
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 1.8e-14 82.0 50 66.0
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 1.8e-14 82.0 52 71.2
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 1.8e-14 82.0 52 71.2
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 3.0e-14 81.3 48 70.8
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 3.9e-14 80.9 58 62.1
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 5.1e-14 80.5 48 72.9
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 1.9e-13 78.6 40 87.5
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 2.5e-13 78.2 48 70.8
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 3.3e-13 77.8 41 82.9
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 4.3e-13 77.4 57 63.2
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 4.3e-13 77.4 52 67.3
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 4.3e-13 77.4 46 73.9
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 2.2e-12 75.1 46 71.7
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 4.8e-12 73.9 54 59.3
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 4.8e-12 73.9 42 73.8
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 6.3e-12 73.6 47 63.8
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 1.4e-11 72.4 38 81.6
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 1.8e-11 72.0 46 65.2
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 2.4e-11 71.6 48 70.8
HanXRQChr16g0507891 Helianthus annuus HOM05D008199 ORTHO05D010334 4.5e-10 67.4 54 61.1
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 7.2e-08 60.1 68 44.1
Pp3c9_50 Physcomitrium patens HOM05D008199 ORTHO05D010334 2.7e-07 58.2 42 66.7


User provided reference genes

Program Settings