Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.9e-264 915.2 448 100.0
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.6e-197 692.2 428 84.6
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 8.5e-188 660.6 448 73.0
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 8.6e-156 554.3 515 57.5
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 6.8e-153 544.7 437 62.7
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 1.2e-149 533.9 438 60.3
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 8.1e-146 521.2 435 61.6
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 1.1e-142 510.8 432 59.5
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 3.6e-138 495.7 433 58.4
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 1.8e-137 493.4 434 57.6
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 5.3e-137 491.9 448 55.6
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 3.4e-136 489.2 423 58.2
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.4e-134 483.8 433 56.1
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.2e-133 480.7 433 57.5
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 1.6e-133 480.3 439 56.5
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 2.7e-133 479.6 438 55.3
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 3.5e-133 479.2 438 57.1
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.3e-132 477.2 438 56.8
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 6.6e-132 474.9 438 55.0
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 1.5e-131 473.8 438 54.8
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 3.3e-131 472.6 431 59.2
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 5.6e-131 471.9 443 56.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-129 467.2 438 56.4
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 6.9e-129 464.9 360 64.4
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.5e-128 463.8 440 55.5
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 2.6e-128 463.0 431 55.2
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 3.4e-128 462.6 414 57.5
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 5.8e-128 461.8 431 57.3
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 7.6e-128 461.5 431 57.3
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.7e-127 460.3 302 74.5
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 1.7e-127 460.3 416 55.5
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 2.9e-127 459.5 434 54.6
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 1.6e-125 453.8 439 55.6
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.6e-125 453.8 414 56.8
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 6.7e-124 448.4 442 53.4
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 2.0e-120 436.8 401 58.6
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.4e-118 430.6 402 56.7
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.2e-118 429.1 438 54.1
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 4.2e-118 429.1 439 50.6
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.2e-117 427.6 438 53.9
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 3.5e-117 426.0 434 52.3
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 6.0e-117 425.2 446 53.1
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 6.0e-117 425.2 436 53.7
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.8e-116 423.7 439 51.7
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.9e-116 422.5 438 49.1
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.9e-116 422.5 438 53.0
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.1e-116 422.2 438 49.3
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 8.7e-116 421.4 434 51.4
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.1e-115 421.0 431 54.1
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 5.6e-115 418.7 446 49.8
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 7.4e-115 418.3 450 50.4
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 9.6e-115 417.9 437 51.0
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 2.4e-113 413.3 396 54.0
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 4.0e-113 412.5 436 50.5
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 6.9e-113 411.8 431 49.9
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.2e-112 411.0 433 49.7
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 5.8e-112 408.7 428 52.1
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 7.6e-112 408.3 430 52.1
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 7.6e-112 408.3 430 52.1
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 1.7e-111 407.1 428 51.9
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 3.8e-111 406.0 426 51.4
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 4.9e-111 405.6 430 51.9
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 4.9e-111 405.6 433 50.1
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 1.9e-110 403.7 475 45.7
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 4.2e-110 402.5 426 50.0
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-109 400.2 433 50.8
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.7e-109 399.8 434 49.3
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 2.7e-109 399.8 440 50.2
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 3.5e-109 399.4 437 50.3
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.3e-108 397.5 433 47.8
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.3e-108 397.5 407 54.1
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.3e-108 397.5 433 49.0
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 5.1e-108 395.6 417 51.6
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.5e-107 394.0 400 52.2
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.9e-107 393.7 439 50.3
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.3e-106 391.0 432 50.0
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 3.7e-106 389.4 436 48.4
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 5.3e-105 385.6 460 47.6
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 5.3e-105 385.6 429 48.7
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 5.3e-105 385.6 429 48.7
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 2.0e-104 383.6 368 53.3
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.4e-104 382.9 416 50.5
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 7.7e-104 381.7 404 51.2
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.7e-103 380.6 441 47.2
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 3.8e-103 379.4 374 53.5
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 4.2e-102 375.9 446 47.5
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.6e-101 374.0 433 49.0
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 8.2e-98 361.7 435 46.4
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 4.5e-96 355.9 433 46.9
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 7.7e-96 355.1 427 45.2
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.5e-94 350.1 396 48.0
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 4.2e-94 349.4 386 50.5
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.4e-94 348.2 431 45.2
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.2e-93 347.8 400 48.0
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.3e-92 343.6 435 45.5
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 3.0e-92 343.2 441 44.7
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 1.1e-91 341.3 416 47.1
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.3e-90 337.8 261 67.4
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 2.2e-90 337.0 313 56.9
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 7.2e-86 322.0 324 52.2
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 4.7e-85 319.3 302 53.6
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 6.1e-85 318.9 318 56.6
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 2.8e-82 310.1 511 39.5
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 9.1e-81 305.1 435 43.2
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.8e-74 282.7 436 39.7
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.8e-74 282.7 274 56.6
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.6e-69 266.5 287 52.3
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 1.5e-67 261.2 436 36.9
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 9.8e-67 258.5 248 52.8
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 4.5e-64 249.6 319 42.9
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 5.5e-62 242.7 425 36.0
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 8.9e-60 235.3 193 56.5
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 5.7e-59 232.6 417 36.2
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.7e-56 223.8 537 30.0
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 3.1e-52 210.3 298 42.6
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 5.2e-52 209.5 414 34.5
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 1.2e-51 208.4 233 45.9
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.9e-49 201.1 236 50.4
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 4.1e-49 199.9 489 31.7
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 2.3e-47 194.1 162 58.0
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 3.0e-47 193.7 197 50.3
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.9e-46 191.0 306 39.9
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 2.1e-45 187.6 221 49.8
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 1.9e-41 174.5 251 43.8
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 1.9e-41 174.5 251 43.8
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.1e-36 158.7 457 30.6
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 6.8e-36 156.0 189 49.2
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 4.4e-35 153.3 164 48.8
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 1.3e-34 151.8 172 46.5
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 8.3e-34 149.1 218 41.7
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 1.2e-32 145.2 161 54.7
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 7.8e-32 142.5 330 31.2
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 2.3e-31 141.0 186 41.9
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.9e-30 137.9 216 41.2
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 7.3e-30 136.0 192 45.3
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-26 125.2 161 40.4
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 1.4e-25 121.7 131 47.3
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 9.3e-25 119.0 145 44.1
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 2.3e-23 114.4 111 49.5
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 9.0e-20 102.4 166 38.0
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 2.2e-18 97.8 166 36.7
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 3.8e-18 97.1 143 42.7
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 9.3e-17 92.4 125 45.6
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 5.1e-15 86.7 66 66.7
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 9.6e-14 82.4 97 48.5
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.2e-11 75.5 61 63.9
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.2e-11 75.5 104 43.3
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 5.4e-09 66.6 83 48.2
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 7.9e-08 62.8 74 39.2
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 2.3e-07 61.2 74 48.6


User provided reference genes

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