Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014349 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.3e-90 335.1 179 100.0
GSVIVG01001897001 Vitis vinifera HOM05D000045 ORTHO05D000611 1.5e-13 80.5 76 57.9
Dinv28801 Davidia involucrata HOM05D000045 ORTHO05D000611 1.9e-13 80.1 58 72.4
Dinv35451 Davidia involucrata HOM05D000045 ORTHO05D000611 1.6e-12 77.0 55 70.9
Cc01_g15980 Coffea canephora HOM05D000045 ORTHO05D000611 4.7e-12 75.5 58 65.5
PGSC0003DMG400010984 Solanum tuberosum HOM05D000045 ORTHO05D000611 8.0e-12 74.7 48 75.0
Oeu049582.1 Olea europaea HOM05D000045 ORTHO05D000611 1.0e-11 74.3 55 69.1
Sopen09g021650 Solanum pennellii HOM05D000045 ORTHO05D000611 3.0e-11 72.8 48 72.9
Solyc09g057880.3 Solanum lycopersicum HOM05D000045 ORTHO05D000611 5.2e-11 72.0 48 70.8
vmacro02829 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 1.2e-10 70.9 54 68.5
Phvul.008G138000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 2.6e-10 69.7 71 52.1
Rhsim13G0054000 Rhododendron simsii HOM05D000045 ORTHO05D000611 3.4e-10 69.3 54 68.5
TWI36G1528 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 3.4e-10 69.3 55 65.5
Glyma.18G154100 Glycine max HOM05D000045 ORTHO05D000611 5.7e-10 68.6 71 50.7
CiPaw.13G057900 Carya illinoinensis HOM05D000045 ORTHO05D000611 7.5e-10 68.2 55 60.0
Nitab4.5_0005686g0060 Nicotiana tabacum HOM05D000045 ORTHO05D000611 1.3e-09 67.4 58 58.6
Psat3g151960 Pisum sativum HOM05D000045 ORTHO05D000611 1.3e-09 67.4 59 55.9
VMungo1383G0949 Vigna mungo HOM05D000045 ORTHO05D000611 3.7e-09 65.9 71 49.3
Duzib133G0678 Durio zibethinus HOM05D000045 ORTHO05D000611 6.3e-09 65.1 70 50.0
Lj1g0012232 Lotus japonicus HOM05D000045 ORTHO05D000611 6.3e-09 65.1 52 61.5
CANSAT01G2047 Cannabis sativa HOM05D000045 ORTHO05D000611 8.3e-09 64.7 67 52.2
COL.COLO4_07042 Corchorus olitorius HOM05D000045 ORTHO05D000611 8.3e-09 64.7 70 51.4
Ca_07435_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.1e-08 64.3 75 44.0
Thecc.01G209200 Theobroma cacao HOM05D000045 ORTHO05D000611 1.4e-08 63.9 70 48.6
Duzib138G1407 Durio zibethinus HOM05D000045 ORTHO05D000611 1.8e-08 63.5 56 55.4
Nn1g09619 Nelumbo nucifera HOM05D000045 ORTHO05D000611 3.1e-08 62.8 65 50.8
QL05p019482 Quercus lobata HOM05D000045 ORTHO05D000611 3.1e-08 62.8 60 51.7
QL09p047388 Quercus lobata HOM05D000045 ORTHO05D000611 3.1e-08 62.8 60 51.7
Lalb_Chr19g0126221 Lupinus albus HOM05D000045 ORTHO05D000611 5.4e-08 62.0 62 53.2
Sed0014099 Sechium edule HOM05D000045 ORTHO05D000611 7.0e-08 61.6 52 59.6
Atru.chr6.3530 Acer truncatum HOM05D000045 ORTHO05D000611 9.1e-08 61.2 52 55.8
CiPaw.13G057800 Carya illinoinensis HOM05D000045 ORTHO05D000611 9.1e-08 61.2 45 64.4
ClCG09G007820 Citrullus lanatus HOM05D000045 ORTHO05D000611 9.1e-08 61.2 52 57.7
Glyma.03G091500 Glycine max HOM05D000045 ORTHO05D000611 9.1e-08 61.2 80 43.8
TAR365G0928 Trochodendron aralioides HOM05D000045 ORTHO05D000611 9.1e-08 61.2 61 54.1
Hma1.2p1_0161F.1_g071570 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 1.2e-07 60.8 52 55.8
Gohir.D07G202400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.6e-07 60.5 70 45.7
CANSAT01G1376 Cannabis sativa HOM05D000045 ORTHO05D000611 2.0e-07 60.1 60 51.7
Gorai.001G227800 Gossypium raimondii HOM05D000045 ORTHO05D000611 2.0e-07 60.1 70 45.7
Manes.13G055600 Manihot esculenta HOM05D000045 ORTHO05D000611 2.0e-07 60.1 60 50.0
Prupe.8G188400 Prunus persica HOM05D000045 ORTHO05D000611 2.0e-07 60.1 60 53.3
Prupe.8G188500 Prunus persica HOM05D000045 ORTHO05D000611 2.7e-07 59.7 55 50.9
TWI75G1249 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 2.7e-07 59.7 52 55.8
Actinidia12911 Actinidia chinensis HOM05D000045 ORTHO05D000611 3.5e-07 59.3 69 50.7
vmacro02832 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 3.5e-07 59.3 69 47.8
Cpa.g.sc8.54 Carica papaya HOM05D000045 ORTHO05D000611 4.5e-07 58.9 52 53.8
MELO3C029191.2 Cucumis melo HOM05D000045 ORTHO05D000611 4.5e-07 58.9 52 55.8
CsaV3_7G027310 Cucumis sativus L. HOM05D000045 ORTHO05D000611 4.5e-07 58.9 52 55.8
Gohir.A07G196000 Gossypium hirsutum HOM05D000045 ORTHO05D000611 4.5e-07 58.9 70 44.3
Potri.002G239400 Populus trichocarpa HOM05D000045 ORTHO05D000611 4.5e-07 58.9 52 51.9
Rhsim13G0054200 Rhododendron simsii HOM05D000045 ORTHO05D000611 4.5e-07 58.9 52 55.8
TPR.G33740 Trifolium pratense HOM05D000045 ORTHO05D000611 4.5e-07 58.9 47 59.6
Sed0011457 Sechium edule HOM05D000045 ORTHO05D000611 5.9e-07 58.5 57 50.9
Aqoxy2G04142 Aquilegia oxysepala HOM05D000045 ORTHO05D000611 7.7e-07 58.2 55 52.7
ClCG10G017250 Citrullus lanatus HOM05D000045 ORTHO05D000611 7.7e-07 58.2 57 49.1
Lj1A103T34 Lonicera japonica HOM05D000045 ORTHO05D000611 7.7e-07 58.2 52 51.9
Peaxi162Scf00235g00015 Petunia axillaris HOM05D000045 ORTHO05D000611 7.7e-07 58.2 60 58.3
FvH4_2g17602 Fragaria vesca HOM05D000045 ORTHO05D000611 1.0e-06 57.8 60 48.3
Sabra02G0182300 Salix brachista HOM05D000045 ORTHO05D000611 1.0e-06 57.8 64 43.8
THA.LOC104826647 Tarenaya hassleriana HOM05D000045 ORTHO05D000611 1.0e-06 57.8 55 50.9
MD05G1156300 Malus domestica HOM05D000045 ORTHO05D000611 1.3e-06 57.4 60 50.0
Haze_03581 Corylus avellana HOM05D000045 ORTHO05D000611 1.7e-06 57.0 45 60.0
PSO017G3764 Papaver somniferum HOM05D000045 ORTHO05D000611 1.7e-06 57.0 48 58.3
Actinidia30001 Actinidia chinensis HOM05D000045 ORTHO05D000611 2.3e-06 56.6 52 53.8
Cc01_g15970 Coffea canephora HOM05D000045 ORTHO05D000611 2.3e-06 56.6 52 51.9
CsaV3_3G039150 Cucumis sativus L. HOM05D000045 ORTHO05D000611 2.3e-06 56.6 68 41.2
Phvul.005G002900 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 2.3e-06 56.6 57 50.9
Potri.014G176600 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.3e-06 56.6 73 39.7
PGR142G2342 Punica granatum HOM05D000045 ORTHO05D000611 2.3e-06 56.6 54 50.0
CANSAT78G0325 Cannabis sativa HOM05D000045 ORTHO05D000611 2.9e-06 56.2 65 44.6
RcHm_v2.0_Chr6g0282571 Rosa chinensis HOM05D000045 ORTHO05D000611 2.9e-06 56.2 60 46.7
AT4G12850 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 3.8e-06 55.8 52 46.2
CSS0013030 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.8e-06 55.8 52 51.9
CiPaw.02G054500 Carya illinoinensis HOM05D000045 ORTHO05D000611 3.8e-06 55.8 57 49.1
QL10p049133 Quercus lobata HOM05D000045 ORTHO05D000611 3.8e-06 55.8 57 47.4
MD10G1150000 Malus domestica HOM05D000045 ORTHO05D000611 5.0e-06 55.5 55 47.3
PGR083G0403 Punica granatum HOM05D000045 ORTHO05D000611 5.0e-06 55.5 52 51.9
TWI18G0572 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 5.0e-06 55.5 60 45.0
VMungo1080G1100 Vigna mungo HOM05D000045 ORTHO05D000611 5.0e-06 55.5 57 50.9
arahy.Tifrunner.gnm1.ann1.4T21GN Arachis hypogaea HOM05D000045 ORTHO05D000611 6.6e-06 55.1 58 46.6
Dinv22738 Davidia involucrata HOM05D000045 ORTHO05D000611 6.6e-06 55.1 55 47.3
Gohir.A03G123700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 6.6e-06 55.1 57 47.4
Gohir.D02G114101 Gossypium hirsutum HOM05D000045 ORTHO05D000611 6.6e-06 55.1 57 47.4
Atru.chr3.4237 Acer truncatum HOM05D000045 ORTHO05D000611 8.6e-06 54.7 57 45.6
arahy.Tifrunner.gnm1.ann1.SVU2WY Arachis hypogaea HOM05D000045 ORTHO05D000611 8.6e-06 54.7 58 46.6
Haze_01486 Corylus avellana HOM05D000045 ORTHO05D000611 8.6e-06 54.7 54 50.0
Sp7g09580 Schrenkiella parvula HOM05D000045 ORTHO05D000611 8.6e-06 54.7 55 43.6


User provided reference genes

Program Settings