Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 4.3e-42 174.1 80 100.0
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 2.9e-38 161.4 80 95.0
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 9.4e-21 103.2 82 58.5
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 7.9e-20 100.1 87 56.3
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 5.1e-19 97.4 80 57.5
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 5.1e-19 97.4 80 56.2
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 2.0e-18 95.5 83 49.4
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 2.2e-17 92.0 76 56.6
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 1.1e-16 89.7 68 58.8
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.4e-16 89.4 67 58.2
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 2.4e-16 88.6 68 54.4
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.1e-16 86.7 81 54.3
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.1e-16 86.7 81 54.3
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 9.1e-16 86.7 79 49.4
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 2.6e-15 85.1 79 50.6
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 3.5e-15 84.7 67 58.2
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 3.5e-15 84.7 69 53.6
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 5.9e-15 84.0 73 53.4
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 1.0e-14 83.2 74 58.1
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 1.0e-14 83.2 83 56.6
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 1.0e-14 83.2 69 50.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.7e-14 82.4 66 59.1
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 1.7e-14 82.4 85 49.4
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 2.9e-14 81.6 83 50.6
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 2.9e-14 81.6 74 58.1
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 2.9e-14 81.6 74 58.1
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 2.9e-14 81.6 74 58.1
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 3.8e-14 81.3 70 51.4
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 8.5e-14 80.1 69 58.0
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.9e-13 79.0 68 52.9
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.5e-13 78.6 62 58.1
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 2.5e-13 78.6 71 50.7
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 2.5e-13 78.6 66 56.1
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 3.2e-13 78.2 68 52.9
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 3.2e-13 78.2 83 53.0
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 4.2e-13 77.8 71 53.5
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 7.2e-13 77.0 70 57.1
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 7.2e-13 77.0 70 57.1
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.2e-12 76.3 71 53.5
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 1.2e-12 76.3 80 53.8
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.6e-12 75.9 60 56.7
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.6e-12 75.9 66 57.6
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-12 75.9 69 58.0
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-12 75.9 69 58.0
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-12 75.9 69 58.0
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 1.6e-12 75.9 69 58.0
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.1e-12 75.5 59 61.0
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.1e-12 75.5 59 61.0
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 2.1e-12 75.5 59 61.0
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 3.6e-12 74.7 69 50.7
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 3.6e-12 74.7 74 56.8
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 4.7e-12 74.3 67 55.2
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 4.7e-12 74.3 66 57.6
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 6.1e-12 73.9 60 53.3
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 6.1e-12 73.9 66 47.0
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 8.0e-12 73.6 75 56.0
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 8.0e-12 73.6 85 51.8
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 8.0e-12 73.6 72 55.6
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 1.0e-11 73.2 64 54.7
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.4e-11 72.8 67 53.7
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 1.4e-11 72.8 74 45.9
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.4e-11 72.8 68 51.5
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.8e-11 72.4 80 47.5
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.8e-11 72.4 80 47.5
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.8e-11 72.4 64 54.7
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 3.0e-11 71.6 61 54.1
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 4.0e-11 71.2 53 56.6
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 6.7e-11 70.5 57 50.9
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 6.7e-11 70.5 63 52.4
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 8.8e-11 70.1 69 47.8
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.3e-10 68.2 81 44.4
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.3e-10 68.2 81 44.4
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 7.5e-10 67.0 63 57.1
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.8e-09 65.1 73 45.2
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 2.8e-09 65.1 54 53.7
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 3.7e-09 64.7 59 50.8
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 8.2e-09 63.5 62 48.4
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.8e-08 62.4 51 52.9
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 7.0e-08 60.5 55 50.9
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 2.7e-07 58.5 79 39.2
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 4.5e-07 57.8 61 45.9
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 5.9e-07 57.4 68 44.1


User provided reference genes

Program Settings