Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014342 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.3e-58 229.6 122 100.0
CSS0009907 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 5.8e-54 214.2 151 80.8
CSS0045042 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 5.4e-52 207.6 151 79.5
CSS0046209 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.9e-44 182.6 122 86.9
QL01p055435 Quercus lobata HOM05D001647 ORTHO05D017173 1.6e-32 142.9 134 64.9
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 1.6e-32 142.9 134 64.9
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 4.0e-31 138.3 90 83.3
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 1.2e-30 136.7 142 62.7
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 4.9e-29 131.3 140 60.0
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 1.4e-28 129.8 139 60.4
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 3.2e-28 128.6 141 57.4
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 4.2e-28 128.3 89 77.5
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 7.1e-28 127.5 85 83.5
Gorai.006G229000 Gossypium raimondii HOM05D001647 ORTHO05D001191 2.1e-27 125.9 134 60.4
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 2.1e-27 125.9 85 83.5
Gohir.A09G211500 Gossypium hirsutum HOM05D001647 ORTHO05D001191 6.0e-27 124.4 134 59.7
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 7.8e-27 124.0 138 61.6
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 1.7e-26 122.9 90 75.6
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 2.3e-26 122.5 138 56.5
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 3.9e-26 121.7 84 82.1
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 6.6e-26 120.9 107 70.1
Gohir.D09G205000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 6.6e-26 120.9 134 59.0
Potri.007G129600 Populus trichocarpa HOM05D001647 ORTHO05D001191 8.7e-26 120.6 84 78.6
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 1.1e-25 120.2 107 70.1
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 1.9e-25 119.4 90 74.4
AUR62002323 Chenopodium quinoa HOM05D001647 ORTHO05D001191 3.3e-25 118.6 135 57.8
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 9.6e-25 117.1 90 74.4
Cc04_g16720 Coffea canephora HOM05D001647 ORTHO05D001191 9.6e-25 117.1 98 73.5
Sabra07G0105500 Salix brachista HOM05D001647 ORTHO05D001191 2.1e-24 115.9 84 75.0
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 4.8e-24 114.8 101 65.3
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 6.2e-24 114.4 83 77.1
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 1.8e-23 112.8 83 74.7
Ah.07g202130 Amaranthus hybridus HOM05D001647 ORTHO05D001191 3.1e-23 112.1 122 60.7
Hund03168 Selenicereus undatus HOM05D001647 ORTHO05D017173 3.1e-23 112.1 90 72.2
AL4G21530 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 5.3e-23 111.3 97 68.0
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 5.3e-23 111.3 97 63.9
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 5.3e-23 111.3 89 71.9
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 6.9e-23 110.9 103 62.1
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 6.9e-23 110.9 103 62.1
Nn1g09609 Nelumbo nucifera HOM05D001647 ORTHO05D001191 6.9e-23 110.9 85 75.3
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 9.0e-23 110.5 82 76.8
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 1.2e-22 110.2 83 74.7
CARHR121430 Cardamine hirsuta HOM05D001647 ORTHO05D001191 1.2e-22 110.2 99 63.6
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 1.2e-22 110.2 78 84.6
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 1.5e-22 109.8 83 73.5
EL10Ac3g05979 Beta vulgaris HOM05D001647 ORTHO05D001191 2.0e-22 109.4 83 75.9
Sc19g0002950 Simmondsia chinensis HOM05D001647 ORTHO05D001191 2.0e-22 109.4 93 71.0
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 2.0e-22 109.4 92 68.5
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 3.4e-22 108.6 89 71.9
TWI15G0581 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 3.4e-22 108.6 84 72.6
C03p31620 Brassica napus HOM05D001647 ORTHO05D001191 4.4e-22 108.2 103 61.2
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 5.8e-22 107.8 97 70.1
Lj6C11T4 Lonicera japonica HOM05D001647 ORTHO05D017173 7.6e-22 107.5 83 75.9
Sp4g11300 Schrenkiella parvula HOM05D001647 ORTHO05D001191 1.3e-21 106.7 83 72.3
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 1.7e-21 106.3 84 71.4
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 1.7e-21 106.3 130 53.8
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.9e-21 105.5 97 68.0
FAN17G2196 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.9e-21 105.5 97 69.1
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 4.9e-21 104.8 97 67.0
Cc03_g11950 Coffea canephora HOM05D001647 ORTHO05D001191 6.4e-21 104.4 91 71.4
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 6.4e-21 104.4 83 71.1
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 8.4e-21 104.0 119 60.5
AT2G28480 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 1.4e-20 103.2 129 57.4
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 2.4e-20 102.4 114 63.2
Thhalv10016829m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 2.4e-20 102.4 108 59.3
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 3.2e-20 102.1 101 59.4
Manes.04G043600 Manihot esculenta HOM05D001647 ORTHO05D001191 3.2e-20 102.1 131 55.7
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 9.3e-20 100.5 83 69.9
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 9.3e-20 100.5 92 67.4
arahy.Tifrunner.gnm1.ann1.G4MAIF Arachis hypogaea HOM05D001647 ORTHO05D001191 2.1e-19 99.4 141 48.9
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 2.1e-19 99.4 86 70.9
C04p22880 Brassica napus HOM05D001647 ORTHO05D001191 3.5e-19 98.6 111 55.0
ATR0824G265 Amborella trichopoda HOM05D001647 ORTHO05D017173 4.6e-19 98.2 108 59.3
Carub.0004s0942 Capsella rubella HOM05D001647 ORTHO05D001191 4.6e-19 98.2 100 62.0
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 1.0e-18 97.1 141 48.2
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 3.0e-18 95.5 78 74.4
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 8.7e-18 94.0 82 67.1
Oeu053823.2 Olea europaea HOM05D001647 ORTHO05D001191 1.1e-17 93.6 93 64.5
Glyma.12G051900 Glycine max HOM05D001647 ORTHO05D001191 2.5e-17 92.4 84 65.5
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 4.3e-17 91.7 88 65.9
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 4.3e-17 91.7 85 69.4
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 2.8e-16 89.0 78 67.9
BolC4t23784H Brassica oleracea HOM05D001647 ORTHO05D001191 6.2e-16 87.8 111 51.4
Peaxi162Scf00141g00924 Petunia axillaris HOM05D001647 ORTHO05D001191 1.1e-15 87.0 84 65.5
PSO732G0352 Papaver somniferum HOM05D000793 ORTHO05D001191 1.4e-15 86.7 140 46.4
Rhsim05G0023400 Rhododendron simsii HOM05D010576 ORTHO05D012109 7.6e-14 80.9 92 54.3
Nitab4.5_0000335g0080 Nicotiana tabacum HOM05D001647 ORTHO05D001191 1.7e-13 79.7 74 62.2
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 2.9e-13 79.0 117 50.4
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 8.4e-13 77.4 88 60.2
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 1.9e-12 76.3 104 52.9
Actinidia34598 Actinidia chinensis HOM05D001647 ORTHO05D017173 3.2e-12 75.5 59 71.2
Eucgr.A00093 Eucalyptus grandis HOM05D001647 ORTHO05D001191 3.2e-12 75.5 63 63.5
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 5.4e-12 74.7 83 56.6
BcaB02g10162 Brassica carinata HOM05D001647 ORTHO05D001191 1.6e-11 73.2 89 53.9
PGR083G0602 Punica granatum HOM05D001647 ORTHO05D001191 1.6e-11 73.2 101 49.5
Nitab4.5_0000511g0050 Nicotiana tabacum HOM05D001647 ORTHO05D001191 3.5e-11 72.0 74 58.1
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 4.6e-11 71.6 82 58.5
CDE02G4217 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 6.0e-11 71.2 61 72.1
CAN.G1002.19 Capsicum annuum HOM05D001647 ORTHO05D001191 7.9e-11 70.9 101 45.5
Zm00001eb140480 Zea mays HOM05D001647 ORTHO05D001191 1.6e-08 63.2 92 48.9
Cc03_g12360 Coffea canephora HOM05D001647 ORTHO05D001191 8.1e-08 60.8 44 84.1
Os01g0958400 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 1.8e-07 59.7 82 52.4
GSVIVG01010789001 Vitis vinifera HOM05D001647 ORTHO05D001191 1.8e-07 59.7 44 84.1


User provided reference genes

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