Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014341 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 4.7e-25 117.1 60 100.0
CSS0026541 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 4.6e-20 100.5 66 83.3
CSS0018148 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 8.9e-16 86.3 46 93.5
CSS0032153 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 8.3e-14 79.7 43 90.7
CSS0008437 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 5.4e-13 77.0 43 88.4
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 1.9e-10 68.6 42 76.2
Actinidia25530 Actinidia chinensis HOM05D003980 ORTHO05D005301 2.5e-10 68.2 42 81.0
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 2.5e-10 68.2 42 81.0
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 5.6e-10 67.0 42 73.8
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 5.6e-10 67.0 42 78.6
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 9.5e-10 66.2 42 76.2
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 9.5e-10 66.2 42 76.2
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 9.5e-10 66.2 40 80.0
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 9.5e-10 66.2 42 78.6
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 1.2e-09 65.9 42 76.2
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 1.2e-09 65.9 42 76.2
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.6e-09 65.5 42 81.0
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 1.6e-09 65.5 40 82.5
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 1.6e-09 65.5 40 82.5
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 2.1e-09 65.1 42 71.4
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 2.1e-09 65.1 42 71.4
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 2.1e-09 65.1 42 76.2
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 2.1e-09 65.1 42 76.2
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 2.8e-09 64.7 42 73.8
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 2.8e-09 64.7 42 73.8
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 2.8e-09 64.7 42 73.8
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 2.8e-09 64.7 43 72.1
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 3.6e-09 64.3 42 76.2
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 3.6e-09 64.3 42 76.2
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 3.6e-09 64.3 40 80.0
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 4.7e-09 63.9 42 73.8
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 4.7e-09 63.9 42 73.8
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 4.7e-09 63.9 42 73.8
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 4.7e-09 63.9 42 73.8
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 4.7e-09 63.9 42 76.2
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 4.7e-09 63.9 40 80.0
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 4.7e-09 63.9 40 77.5
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 6.2e-09 63.5 40 80.0
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 6.2e-09 63.5 40 77.5
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 6.2e-09 63.5 42 73.8
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 6.2e-09 63.5 42 73.8
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 6.2e-09 63.5 40 80.0
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 8.1e-09 63.2 40 77.5
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 8.1e-09 63.2 40 77.5
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 8.1e-09 63.2 40 77.5
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 8.1e-09 63.2 40 77.5
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 8.1e-09 63.2 40 75.0
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 8.1e-09 63.2 40 80.0
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 8.1e-09 63.2 42 73.8
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 8.1e-09 63.2 42 71.4
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 8.1e-09 63.2 40 80.0
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 8.1e-09 63.2 41 73.2
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 8.1e-09 63.2 41 75.6
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 1.1e-08 62.8 42 73.8
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 1.1e-08 62.8 42 73.8
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 1.4e-08 62.4 42 73.8
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.4e-08 62.4 40 77.5
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.4e-08 62.4 42 73.8
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 1.4e-08 62.4 42 73.8
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 1.4e-08 62.4 40 77.5
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 1.4e-08 62.4 40 80.0
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.8e-08 62.0 40 77.5
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.8e-08 62.0 40 77.5
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.8e-08 62.0 40 77.5
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.8e-08 62.0 40 77.5
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 1.8e-08 62.0 40 80.0
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.8e-08 62.0 42 73.8
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 2.3e-08 61.6 40 72.5
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 2.3e-08 61.6 40 75.0
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 2.3e-08 61.6 42 73.8
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 3.1e-08 61.2 40 75.0
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 3.1e-08 61.2 40 75.0
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 3.1e-08 61.2 42 76.2
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 75.0
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 75.0
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 77.5
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 75.0
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 75.0
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 75.0
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 72.5
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 4.0e-08 60.8 40 75.0
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 4.0e-08 60.8 42 73.8
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 4.0e-08 60.8 42 71.4
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 4.0e-08 60.8 42 71.4
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 4.0e-08 60.8 42 69.0
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 5.2e-08 60.5 40 72.5
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 6.8e-08 60.1 40 72.5
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 6.8e-08 60.1 42 69.0
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 6.8e-08 60.1 40 75.0
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 6.8e-08 60.1 42 69.0
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 6.8e-08 60.1 42 73.8
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 6.8e-08 60.1 42 73.8
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 6.8e-08 60.1 42 73.8
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 6.8e-08 60.1 42 71.4
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 8.9e-08 59.7 40 72.5
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 8.9e-08 59.7 40 72.5
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 8.9e-08 59.7 41 78.0
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 1.5e-07 58.9 42 71.4
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 2.6e-07 58.2 42 66.7
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 2.6e-07 58.2 40 72.5
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.4e-07 57.8 41 78.0
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 3.4e-07 57.8 42 69.0
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 4.4e-07 57.4 40 72.5
Psat7g039040 Pisum sativum HOM05D003980 ORTHO05D005301 4.4e-07 57.4 41 75.6
SHI14120 Sapria himalayana HOM05D003980 ORTHO05D005301 4.4e-07 57.4 43 67.4
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 5.8e-07 57.0 42 64.3
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 5.8e-07 57.0 42 69.0
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 7.6e-07 56.6 37 73.0
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 7.6e-07 56.6 42 69.0
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 9.9e-07 56.2 40 75.0
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 1.3e-06 55.8 40 67.5
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 1.3e-06 55.8 40 67.5
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 1.7e-06 55.5 42 64.3
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 1.7e-06 55.5 41 75.6
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 1.7e-06 55.5 42 69.0
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 1.7e-06 55.5 40 67.5
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 2.2e-06 55.1 40 65.0
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 4.9e-06 53.9 40 67.5
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 4.9e-06 53.9 37 73.0
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 4.9e-06 53.9 40 62.5
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 6.4e-06 53.5 42 64.3
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 6.4e-06 53.5 40 62.5
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 8.4e-06 53.1 40 65.0


User provided reference genes

Program Settings