Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 2.1e-141 505.8 264 100.0
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 2.8e-138 495.4 264 98.1
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 2.8e-106 389.0 264 78.4
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 2.6e-104 382.5 264 76.9
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 5.7e-99 364.8 253 75.9
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 2.3e-92 342.8 257 68.9
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.2e-91 340.5 270 68.1
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 9.8e-91 337.4 255 69.0
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 1.1e-89 334.0 255 68.2
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 4.5e-88 328.6 392 51.5
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 7.7e-88 327.8 262 65.3
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 2.2e-87 326.2 264 63.6
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 6.5e-87 324.7 409 49.1
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.1e-86 323.9 262 64.5
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.1e-85 319.7 254 65.7
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 6.1e-85 318.2 256 63.3
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 1.4e-84 317.0 262 59.2
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.5e-83 313.5 255 65.9
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 7.5e-83 311.2 255 63.9
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 3.7e-82 308.9 255 63.5
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.1e-81 305.4 264 57.6
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 9.2e-81 304.3 249 62.2
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 4.5e-80 302.0 264 57.2
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 7.7e-80 301.2 251 61.0
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 6.6e-79 298.1 258 59.7
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 8.6e-79 297.7 257 60.7
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 8.6e-79 297.7 261 57.1
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 1.5e-78 297.0 262 61.5
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 3.3e-78 295.8 258 58.9
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 4.3e-78 295.4 262 57.6
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.1e-77 293.1 264 56.1
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 2.8e-77 292.7 257 58.8
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 8.0e-77 291.2 251 59.8
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 3.0e-76 289.3 254 58.3
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.2e-75 287.3 257 58.4
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 1.5e-75 287.0 264 55.7
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 2.0e-75 286.6 259 57.9
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 3.7e-74 282.3 264 58.7
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 1.4e-73 280.4 222 62.6
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 1.2e-72 277.3 255 56.5
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 2.7e-72 276.2 251 56.6
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 1.0e-71 274.2 251 56.2
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 1.1e-70 270.8 258 55.0
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 1.1e-70 270.8 258 55.0
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.5e-70 270.4 261 57.1
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 8.0e-69 264.6 249 52.2
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 5.2e-68 261.9 255 54.1
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 1.2e-67 260.8 260 55.0
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 2.0e-67 260.0 260 55.8
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 2.6e-67 259.6 264 50.4
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 1.7e-66 256.9 258 51.9
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 2.9e-66 256.1 258 51.9
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 3.7e-66 255.8 228 57.9
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 4.9e-66 255.4 264 50.8
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 6.4e-66 255.0 358 42.7
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 8.3e-66 254.6 264 49.6
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 1.4e-65 253.8 260 50.8
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 2.4e-65 253.1 258 51.6
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 3.2e-65 252.7 265 50.9
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 9.2e-65 251.1 262 48.1
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 1.2e-64 250.8 264 48.9
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.6e-64 250.4 264 48.5
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 1.6e-64 250.4 262 48.9
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 1.6e-64 250.4 262 48.9
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 1.6e-64 250.4 254 51.2
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 3.5e-64 249.2 263 47.9
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.7e-63 246.9 251 54.2
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.7e-63 246.9 251 54.2
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 1.1e-62 244.2 256 50.8
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 2.5e-62 243.0 262 46.9
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 1.6e-61 240.4 255 49.0
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 6.2e-61 238.4 249 51.4
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 1.8e-60 236.9 264 48.1
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 1.8e-60 236.9 245 54.3
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 3.1e-60 236.1 255 50.2
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 5.2e-60 235.3 253 48.6
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 2.6e-59 233.0 221 53.8
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 7.5e-59 231.5 246 49.6
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 9.8e-59 231.1 220 53.6
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 6.4e-58 228.4 262 46.9
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 1.4e-57 227.3 259 47.1
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 3.2e-57 226.1 221 53.8
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 1.3e-55 220.7 261 47.5
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.9e-54 216.9 261 46.7
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 2.3e-52 209.9 170 62.4
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 2.3e-52 209.9 260 43.1
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 4.0e-52 209.1 394 38.1
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.2e-48 197.6 254 44.1
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 1.5e-46 190.7 204 48.5
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 3.6e-45 186.0 222 48.6
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 3.1e-44 183.0 222 47.3
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 1.2e-43 181.0 138 68.8
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 1.5e-43 180.6 253 39.9
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 2.0e-43 180.3 243 42.0
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 8.4e-42 174.9 249 41.0
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 4.0e-36 156.0 150 53.3
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 6.4e-34 148.7 222 45.0
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.3e-31 141.0 118 57.6
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 9.6e-30 134.8 145 51.7
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 6.2e-29 132.1 145 50.3
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.1e-28 131.3 145 50.3
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 1.4e-28 131.0 145 50.3
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.2e-27 127.9 109 65.1
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 4.6e-24 115.9 254 31.1
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 2.3e-23 113.6 85 74.1
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 3.7e-21 106.3 120 51.7
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 4.8e-21 105.9 107 54.2
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.5e-19 100.9 99 55.6
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.0e-15 88.2 83 56.6
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.1e-15 85.9 74 58.1
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 6.7e-15 85.5 99 46.5
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 4.3e-14 82.8 123 39.8
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 4.3e-14 82.8 123 39.8
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 5.7e-14 82.4 94 46.8
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 1.4e-12 77.8 257 24.9
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 1.7e-10 70.9 68 51.5
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 3.9e-07 59.7 99 39.4


User provided reference genes

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