Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 5.7e-23 110.9 101 100.0
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.4e-16 89.7 42 95.2
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.8e-16 89.4 42 92.9
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.9e-16 88.2 58 69.0
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.9e-16 88.2 58 69.0
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 1.1e-15 86.7 41 95.1
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 1.1e-15 86.7 41 95.1
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 1.1e-15 86.7 64 64.1
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.5e-15 86.3 41 92.7
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.5e-15 86.3 41 92.7
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.5e-15 86.3 41 92.7
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.5e-15 86.3 41 92.7
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 2.6e-15 85.5 41 92.7
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 3.3e-15 85.1 41 95.1
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 3.3e-15 85.1 40 95.0
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 3.3e-15 85.1 41 92.7
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 4.4e-15 84.7 42 88.1
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 4.4e-15 84.7 55 69.1
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 4.4e-15 84.7 55 69.1
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 4.4e-15 84.7 70 60.0
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 7.4e-15 84.0 41 90.2
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 7.4e-15 84.0 41 90.2
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 9.7e-15 83.6 42 90.5
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 1.7e-14 82.8 41 87.8
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 1.7e-14 82.8 41 87.8
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 1.7e-14 82.8 41 87.8
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 1.7e-14 82.8 41 87.8
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.2e-14 82.4 42 85.7
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 3.7e-14 81.6 40 92.5
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 3.7e-14 81.6 41 85.4
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 4.8e-14 81.3 42 88.1
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 6.3e-14 80.9 64 84.4
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 8.2e-14 80.5 40 87.5
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 8.2e-14 80.5 40 87.5
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 8.2e-14 80.5 55 78.2
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 1.1e-13 80.1 39 89.7
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 1.1e-13 80.1 41 87.8
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 1.4e-13 79.7 41 90.2
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 1.8e-13 79.3 68 61.8
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 1.8e-13 79.3 40 87.5
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 1.8e-13 79.3 42 83.3
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 2.4e-13 79.0 39 87.2
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 2.4e-13 79.0 41 85.4
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 5.3e-13 77.8 35 97.1
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 7.0e-13 77.4 37 89.2
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 7.0e-13 77.4 42 85.7
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 9.1e-13 77.0 40 82.5
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.6e-12 76.3 39 87.2
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.6e-12 76.3 42 85.7
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 1.6e-12 76.3 42 83.3
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.6e-12 75.5 41 87.8
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 3.5e-12 75.1 36 88.9
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 3.5e-12 75.1 36 88.9
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 3.5e-12 75.1 42 78.6
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 3.5e-12 75.1 41 80.5
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 3.5e-12 75.1 41 80.5
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 3.5e-12 75.1 41 80.5
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 4.5e-12 74.7 37 89.2
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 4.5e-12 74.7 35 91.4
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 5.9e-12 74.3 42 81.0
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 5.9e-12 74.3 36 91.7
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 7.7e-12 73.9 48 66.7
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 7.7e-12 73.9 40 82.5
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 1.0e-11 73.6 38 86.8
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 1.0e-11 73.6 41 82.9
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 1.0e-11 73.6 41 82.9
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 1.3e-11 73.2 36 88.9
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 1.3e-11 73.2 40 80.0
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.3e-11 73.2 42 85.7
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 1.7e-11 72.8 35 91.4
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.7e-11 72.8 42 76.2
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 1.7e-11 72.8 35 88.6
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 1.7e-11 72.8 34 91.2
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 2.2e-11 72.4 40 77.5
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 2.9e-11 72.0 39 82.1
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 2.9e-11 72.0 40 77.5
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 2.9e-11 72.0 37 89.2
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 3.8e-11 71.6 39 79.5
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 3.8e-11 71.6 42 83.3
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 3.8e-11 71.6 39 79.5
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.0e-11 71.2 39 79.5
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.0e-11 71.2 39 79.5
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 6.5e-11 70.9 36 83.3
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 8.5e-11 70.5 58 55.2
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 1.1e-10 70.1 41 78.0
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.1e-10 70.1 38 84.2
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 1.5e-10 69.7 38 78.9
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 1.5e-10 69.7 42 81.0
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 3.2e-10 68.6 36 80.6
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.2e-10 68.2 37 81.1
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 9.4e-10 67.0 36 77.8
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 1.6e-09 66.2 34 79.4
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 6.1e-09 64.3 34 82.4
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 8.0e-09 63.9 46 65.2
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 1.4e-08 63.2 41 73.2
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 9.7e-07 57.0 39 66.7
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.7e-06 56.2 31 80.6


User provided reference genes

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