Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014314 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 3.0e-35 151.4 79 100.0
Actinidia32683 Actinidia chinensis HOM05D000325 ORTHO05D002025 1.3e-11 72.8 44 86.4
CSS0023025 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 3.0e-11 71.6 44 86.4
CSS0045642 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 3.0e-11 71.6 44 86.4
Rhsim03G0242800 Rhododendron simsii HOM05D000325 ORTHO05D002025 3.9e-11 71.2 47 78.7
Actinidia09415 Actinidia chinensis HOM05D000325 ORTHO05D002025 1.1e-10 69.7 44 81.8
vmacro06215 Vaccinium macrocarpon HOM05D000325 ORTHO05D002025 2.5e-10 68.6 46 78.3
Actinidia20353 Actinidia chinensis HOM05D000325 ORTHO05D002025 7.4e-10 67.0 44 79.5
Prupe.7G230400 Prunus persica HOM05D000325 ORTHO05D002025 1.6e-09 65.9 65 55.4
Eucgr.C01046 Eucalyptus grandis HOM05D000325 ORTHO05D002025 2.8e-09 65.1 44 70.5
QL02p085481 Quercus lobata HOM05D000325 ORTHO05D002025 8.1e-09 63.5 44 68.2
Sed0022110 Sechium edule HOM05D000325 ORTHO05D002025 8.1e-09 63.5 44 70.5
Eucgr.C01045 Eucalyptus grandis HOM05D000325 ORTHO05D002025 1.1e-08 63.2 44 68.2
FvH4_1g04930 Fragaria vesca HOM05D000325 ORTHO05D002025 1.1e-08 63.2 44 68.2
FAN04G0717 Fragaria x ananassa HOM05D000325 ORTHO05D002025 1.1e-08 63.2 44 68.2
FAN19G1309 Fragaria x ananassa HOM05D000325 ORTHO05D002025 1.1e-08 63.2 44 68.2
FAN26G1424 Fragaria x ananassa HOM05D000325 ORTHO05D002025 1.1e-08 63.2 44 68.2
FAN28G3027 Fragaria x ananassa HOM05D000325 ORTHO05D002025 1.1e-08 63.2 44 68.2
MD02G1047800 Malus domestica HOM05D000325 ORTHO05D002025 1.1e-08 63.2 65 52.3
Atru.chr7.1345 Acer truncatum HOM05D000325 ORTHO05D002025 1.4e-08 62.8 65 52.3
Oeu002228.1 Olea europaea HOM05D000325 ORTHO05D002025 1.4e-08 62.8 44 72.7
PGR142G0567 Punica granatum HOM05D000325 ORTHO05D002025 1.4e-08 62.8 44 65.9
Lsat_1_v5_gn_8_95460 Lactuca sativa HOM05D000325 ORTHO05D002025 1.8e-08 62.4 44 72.7
ClCG06G008500 Citrullus lanatus HOM05D000325 ORTHO05D002025 2.4e-08 62.0 44 68.2
Ciclev10007676m.g Citrus clementina HOM05D000325 ORTHO05D002025 2.4e-08 62.0 65 50.8
MELO3C025335.2 Cucumis melo HOM05D000325 ORTHO05D002025 2.4e-08 62.0 44 68.2
CsaV3_1G030500 Cucumis sativus L. HOM05D000325 ORTHO05D002025 2.4e-08 62.0 44 68.2
HanXRQChr06g0180021 Helianthus annuus HOM05D000325 ORTHO05D002025 3.1e-08 61.6 44 72.7
Lj2g0017706 Lotus japonicus HOM05D000325 ORTHO05D002025 3.1e-08 61.6 44 63.6
MD15G1186300 Malus domestica HOM05D000325 ORTHO05D002025 3.1e-08 61.6 44 65.9
Oeu055862.1 Olea europaea HOM05D000325 ORTHO05D002025 3.1e-08 61.6 44 70.5
Psat1g042440 Pisum sativum HOM05D000325 ORTHO05D002025 3.1e-08 61.6 44 63.6
Cc06_g09620 Coffea canephora HOM05D000325 ORTHO05D002025 4.0e-08 61.2 44 70.5
Dinv41597 Davidia involucrata HOM05D000325 ORTHO05D002025 4.0e-08 61.2 44 68.2
GSVIVG01015396001 Vitis vinifera HOM05D000325 ORTHO05D002025 4.0e-08 61.2 44 68.2
Cfa003260 Carpinus fangiana HOM05D000325 ORTHO05D002025 5.3e-08 60.8 44 63.6
COL.COLO4_34915 Corchorus olitorius HOM05D000325 ORTHO05D002025 5.3e-08 60.8 65 52.3
Haze_25711 Corylus avellana HOM05D000325 ORTHO05D002025 5.3e-08 60.8 44 63.6
Dinv36623 Davidia involucrata HOM05D000325 ORTHO05D002025 5.3e-08 60.8 44 70.5
Migut.O00075 Erythranthe guttata HOM05D000325 ORTHO05D002025 5.3e-08 60.8 44 72.7
FAN23G2984 Fragaria x ananassa HOM05D000325 ORTHO05D002025 5.3e-08 60.8 44 65.9
Gohir.A06G062200 Gossypium hirsutum HOM05D000325 ORTHO05D002025 5.3e-08 60.8 65 52.3
Gohir.D06G060500 Gossypium hirsutum HOM05D000325 ORTHO05D002025 5.3e-08 60.8 65 52.3
Gorai.010G070400 Gossypium raimondii HOM05D000325 ORTHO05D002025 5.3e-08 60.8 65 52.3
TAR624G1097 Trochodendron aralioides HOM05D000325 ORTHO05D002025 5.3e-08 60.8 44 63.6
arahy.Tifrunner.gnm1.ann1.L3KDU2 Arachis hypogaea HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 63.6
arahy.Tifrunner.gnm1.ann1.ZLIL7H Arachis hypogaea HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 63.6
MSTRG.6004 Avicennia marina HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 70.5
CiPaw.03G232600 Carya illinoinensis HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 63.6
Phvul.004G163100 Phaseolus vulgaris HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 63.6
Sopen07g016130 Solanum pennellii HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 70.5
THA.LOC104811108 Tarenaya hassleriana HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 68.2
VMungo0464G1992 Vigna mungo HOM05D000325 ORTHO05D002025 6.9e-08 60.5 44 63.6
Glyma.05G231200 Glycine max HOM05D000325 ORTHO05D002025 9.0e-08 60.1 44 63.6
Nitab4.5_0000017g0090 Nicotiana tabacum HOM05D000325 ORTHO05D002025 9.0e-08 60.1 44 70.5
Nitab4.5_0003316g0010 Nicotiana tabacum HOM05D000325 ORTHO05D002025 9.0e-08 60.1 44 70.5
Hund09199 Selenicereus undatus HOM05D000325 ORTHO05D002025 9.0e-08 60.1 44 68.2
Thecc.09G111100 Theobroma cacao HOM05D000325 ORTHO05D002025 9.0e-08 60.1 65 52.3
VMungo0251G0249 Vigna mungo HOM05D000325 ORTHO05D002025 9.0e-08 60.1 44 63.6
DCAR_028714 Daucus carota HOM05D000325 ORTHO05D002025 1.2e-07 59.7 44 68.2
Duzib150G0310 Durio zibethinus HOM05D000325 ORTHO05D002025 1.2e-07 59.7 65 50.8
Sed0001455 Sechium edule HOM05D000325 ORTHO05D002025 1.2e-07 59.7 44 65.9
Sc18g0001190 Simmondsia chinensis HOM05D000325 ORTHO05D002025 1.2e-07 59.7 44 65.9
SGA_v2.0_scaffold229G43316 Striga asiatica HOM05D000325 ORTHO05D002025 1.2e-07 59.7 44 68.2
Phvul.002G313400 Phaseolus vulgaris HOM05D000325 ORTHO05D002025 2.0e-07 58.9 44 63.6
Ah.09g227950 Amaranthus hybridus HOM05D000325 ORTHO05D002025 2.6e-07 58.5 44 65.9
CiPaw.04G164500 Carya illinoinensis HOM05D000325 ORTHO05D002025 2.6e-07 58.5 44 63.6
AUR62011000 Chenopodium quinoa HOM05D000325 ORTHO05D002025 2.6e-07 58.5 44 65.9
Glyma.08G038700 Glycine max HOM05D000325 ORTHO05D002025 2.6e-07 58.5 44 63.6
Glyma.16G032300 Glycine max HOM05D000325 ORTHO05D002025 2.6e-07 58.5 44 63.6
Medtr6g086635 Medicago truncatula HOM05D000325 ORTHO05D002025 2.6e-07 58.5 44 59.1
TAR383G1009 Trochodendron aralioides HOM05D000325 ORTHO05D002025 2.6e-07 58.5 44 63.6
CAN.G238.1 Capsicum annuum HOM05D000325 ORTHO05D002025 3.4e-07 58.2 44 70.5
Manes.03G020000 Manihot esculenta HOM05D000325 ORTHO05D002025 3.4e-07 58.2 44 61.4
vmacro18902 Vaccinium macrocarpon HOM05D000325 ORTHO05D002025 3.4e-07 58.2 44 59.1
THA.LOC104799073 Tarenaya hassleriana HOM05D000325 ORTHO05D002025 4.5e-07 57.8 44 65.9
TWI34G0795 Tripterygium wilfordii HOM05D000325 ORTHO05D002025 4.5e-07 57.8 44 61.4
AUR62021511 Chenopodium quinoa HOM05D000325 ORTHO05D002025 5.8e-07 57.4 44 65.9
Gohir.A07G006400 Gossypium hirsutum HOM05D000325 ORTHO05D002025 5.8e-07 57.4 44 63.6
Gohir.D07G005600 Gossypium hirsutum HOM05D000325 ORTHO05D002025 5.8e-07 57.4 44 63.6
Gorai.001G005200 Gossypium raimondii HOM05D000325 ORTHO05D002025 5.8e-07 57.4 44 63.6
RcHm_v2.0_Chr2g0090521 Rosa chinensis HOM05D000325 ORTHO05D002025 5.8e-07 57.4 44 61.4
Sabra18G0067200 Salix brachista HOM05D000325 ORTHO05D002025 5.8e-07 57.4 64 46.9
CSS0015846 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 7.6e-07 57.0 44 59.1
Glyma.07G086600 Glycine max HOM05D000325 ORTHO05D002025 7.6e-07 57.0 44 61.4
Lalb_Chr09g0331171 Lupinus albus HOM05D000325 ORTHO05D002025 7.6e-07 57.0 44 59.1
Rhsim08G0222100 Rhododendron simsii HOM05D000325 ORTHO05D002025 7.6e-07 57.0 44 56.8
Cpa.g.sc810.3 Carica papaya HOM05D000325 ORTHO05D002025 9.9e-07 56.6 53 52.8
Lj4g0006060 Lotus japonicus HOM05D000325 ORTHO05D002025 9.9e-07 56.6 44 59.1
Lj3g0019914 Lotus japonicus HOM05D000325 ORTHO05D002025 1.3e-06 56.2 44 54.5
Lalb_Chr14g0371481 Lupinus albus HOM05D000325 ORTHO05D002025 1.7e-06 55.8 44 61.4
EL10Ac8g18502 Beta vulgaris HOM05D000325 ORTHO05D002025 2.2e-06 55.5 44 63.6
Ca_17339_v3 Cicer arietinum L. HOM05D000325 ORTHO05D002025 2.2e-06 55.5 44 56.8
Dinv30504 Davidia involucrata HOM05D000325 ORTHO05D002025 2.2e-06 55.5 44 54.5
ECA232G3144 Erigeron canadensis HOM05D000325 ORTHO05D002025 2.2e-06 55.5 44 61.4
Nn8g39201 Nelumbo nucifera HOM05D000325 ORTHO05D002025 2.2e-06 55.5 44 59.1
Oeu028160.1 Olea europaea HOM05D000325 ORTHO05D002025 2.2e-06 55.5 44 54.5
Peaxi162Scf00560g00113 Petunia axillaris HOM05D000325 ORTHO05D002025 2.2e-06 55.5 37 73.0
Aqoxy7G01687 Aquilegia oxysepala HOM05D000325 ORTHO05D002025 2.9e-06 55.1 44 56.8
Lsat_1_v5_gn_4_102360 Lactuca sativa HOM05D000325 ORTHO05D002025 2.9e-06 55.1 44 56.8
Peaxi162Scf00034g00824 Petunia axillaris HOM05D000325 ORTHO05D002025 2.9e-06 55.1 67 38.8
Sp7g30120 Schrenkiella parvula HOM05D000325 ORTHO05D002025 2.9e-06 55.1 44 61.4
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 2.9e-06 55.1 44 56.8
Aa31LG2G18280 Aethionema arabicum HOM05D000325 ORTHO05D002025 3.8e-06 54.7 44 61.4
Glyma.09G190400 Glycine max HOM05D000325 ORTHO05D002025 3.8e-06 54.7 44 56.8
Thhalv10024566m.g Eutrema salsugineum HOM05D000325 ORTHO05D002025 4.9e-06 54.3 44 59.1


User provided reference genes

Program Settings