Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 3.1e-76 288.5 155 100.0
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 2.1e-53 212.6 157 77.1
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 1.2e-43 180.3 158 67.1
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 4.4e-43 178.3 158 67.7
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.3e-42 176.8 158 66.5
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.1e-40 169.5 156 64.1
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 3.5e-40 168.7 156 64.1
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 4.6e-40 168.3 142 69.7
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 6.0e-40 167.9 152 70.4
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.0e-39 167.2 164 65.2
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 1.3e-39 166.8 162 62.3
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.3e-39 166.8 141 67.4
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.3e-39 166.8 150 68.0
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.3e-39 166.8 158 62.0
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.7e-39 166.4 141 67.4
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.3e-39 166.0 156 63.5
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 6.6e-39 164.5 165 60.6
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 6.6e-39 164.5 146 69.2
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.5e-38 163.3 153 64.1
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 1.5e-38 163.3 161 64.6
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.9e-38 162.9 157 64.3
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.9e-38 162.9 139 68.3
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 3.3e-38 162.2 160 63.8
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 5.6e-38 161.4 158 64.6
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 5.6e-38 161.4 135 69.6
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 7.3e-38 161.0 141 66.7
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 9.6e-38 160.6 141 68.1
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 1.3e-37 160.2 158 63.9
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.3e-37 160.2 158 63.9
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.8e-37 159.1 158 63.3
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 2.8e-37 159.1 157 63.7
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 3.6e-37 158.7 138 65.9
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 4.8e-37 158.3 143 69.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 6.2e-37 157.9 140 67.9
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 8.1e-37 157.5 160 63.1
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 8.1e-37 157.5 158 61.4
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 8.1e-37 157.5 140 67.1
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 8.1e-37 157.5 140 67.1
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.4e-36 156.8 149 63.8
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 1.8e-36 156.4 156 61.5
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 4.0e-36 155.2 153 64.1
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 4.0e-36 155.2 148 64.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 4.0e-36 155.2 114 76.3
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 6.9e-36 154.5 138 65.9
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 6.9e-36 154.5 156 60.3
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.0e-35 152.9 154 62.3
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 3.4e-35 152.1 141 66.0
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 4.9e-34 148.3 155 60.6
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.1e-33 147.1 153 61.4
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.4e-33 146.7 144 65.3
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 2.4e-33 146.0 153 62.7
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 2.4e-33 146.0 153 62.1
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 3.2e-33 145.6 162 58.6
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 4.2e-33 145.2 141 63.1
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 4.2e-33 145.2 141 63.1
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 5.4e-33 144.8 139 61.2
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 7.1e-33 144.4 143 60.1
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 7.1e-33 144.4 143 60.1
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 9.3e-33 144.1 155 60.0
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 1.2e-32 143.7 154 63.0
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 2.1e-32 142.9 164 56.1
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.7e-32 142.5 146 64.4
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 3.5e-32 142.1 153 59.5
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 3.5e-32 142.1 140 60.7
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 4.6e-32 141.7 174 54.0
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 7.9e-32 141.0 142 62.7
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 7.9e-32 141.0 142 62.0
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 7.9e-32 141.0 140 61.4
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.3e-31 140.2 146 61.6
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.0e-31 139.0 153 60.1
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 5.1e-31 138.3 139 62.6
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 5.1e-31 138.3 139 62.6
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 5.1e-31 138.3 139 62.6
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 8.7e-31 137.5 141 61.0
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.1e-30 137.1 143 59.4
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.5e-30 136.7 141 61.7
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.5e-30 136.7 142 62.0
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.5e-30 136.7 142 62.0
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.9e-30 136.3 142 60.6
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 3.3e-30 135.6 159 56.0
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 3.3e-30 135.6 143 58.7
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 3.3e-30 135.6 147 59.9
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 5.6e-30 134.8 158 56.3
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 5.6e-30 134.8 107 70.1
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 7.4e-30 134.4 141 59.6
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 9.6e-30 134.0 142 60.6
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.3e-29 133.7 153 55.6
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.1e-29 132.9 140 60.0
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 8.1e-29 131.0 141 58.2
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 1.4e-28 130.2 141 57.4
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 1.8e-28 129.8 154 56.5
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.8e-28 129.8 140 58.6
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 2.4e-28 129.4 122 63.9
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 5.3e-28 128.3 153 58.2
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 9.0e-28 127.5 139 60.4
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 1.5e-27 126.7 153 57.5
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 2.0e-27 126.3 140 60.7
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 2.0e-27 126.3 145 55.2
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 3.4e-27 125.6 139 61.9
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 1.3e-26 123.6 143 52.4
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 4.9e-26 121.7 140 58.6
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.9e-25 119.8 152 53.3
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 3.5e-24 115.5 137 56.9
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 3.5e-24 115.5 153 52.9
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 6.0e-24 114.8 159 54.7
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 1.3e-23 113.6 126 61.9
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.3e-23 112.8 86 72.1
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.1e-22 110.5 80 71.2
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.5e-22 109.4 153 51.0
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.5e-22 109.4 153 51.0
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 9.6e-22 107.5 79 70.9
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 6.9e-20 101.3 133 54.1
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 9.0e-20 100.9 90 64.4
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 2.0e-19 99.8 78 70.5
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 3.4e-19 99.0 89 65.2
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 7.6e-19 97.8 158 44.3
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 2.2e-18 96.3 140 50.0
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 2.2e-18 96.3 165 44.2
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 1.2e-16 90.5 153 45.8
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 5.1e-15 85.1 59 76.3
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 1.6e-13 80.1 128 48.4
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.4e-12 77.0 121 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 2.4e-12 76.3 121 49.6
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.2e-11 73.9 133 46.6
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 2.6e-11 72.8 133 47.4
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 4.5e-11 72.0 134 44.0
Dinv40659 Davidia involucrata HOM05D067992 ORTHO05D037981 4.2e-09 65.5 66 59.1
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 4.6e-08 62.0 83 54.2
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 8.8e-07 57.8 46 67.4


User provided reference genes

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