Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 2373.6 1199 100.0
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1827.8 1278 75.8
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1817.7 1281 74.6
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1723.4 1251 74.0
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1627.5 1251 69.5
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1621.7 1284 67.9
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1605.9 1300 68.2
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1605.1 1263 68.4
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1602.0 1256 68.8
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1597.4 1242 68.2
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1593.2 1257 67.3
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1592.4 1229 68.8
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1586.6 1306 67.3
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1576.2 1224 68.7
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1573.9 1278 66.6
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1563.5 1261 66.9
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1562.0 1224 67.8
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1557.3 1273 65.9
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1555.0 1257 66.1
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1551.2 1265 66.2
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1545.8 1265 65.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1540.0 1257 66.0
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1533.1 1253 67.0
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1527.7 1259 65.8
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1498.4 1256 63.1
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1479.2 1267 62.7
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1476.5 1279 62.5
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1475.3 1244 63.3
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1473.0 1252 64.5
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1469.5 1228 64.0
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1468.0 1266 62.6
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1460.7 1259 63.1
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1458.0 1266 62.8
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1454.9 1265 62.1
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1454.9 1266 62.9
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1451.8 1287 61.1
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1449.1 1270 61.4
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1447.2 1260 62.8
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1446.4 1261 62.5
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1443.3 1287 60.9
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1437.6 1264 62.5
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1434.5 1265 62.1
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1431.4 1334 60.3
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1412.5 1264 61.1
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1402.1 1270 61.7
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1402.1 1291 60.3
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1401.7 1258 61.1
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1400.6 1242 61.0
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1400.2 1272 60.8
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1383.2 1225 62.9
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1380.2 1261 60.5
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1372.8 1277 59.4
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1371.7 1222 62.8
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1368.2 1250 61.7
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1366.3 1273 60.0
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1358.6 1165 63.2
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1358.6 1214 61.3
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1354.7 1293 59.2
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1346.3 1287 58.8
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1330.5 1283 58.8
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1325.5 1206 61.6
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1305.8 1281 58.3
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1285.4 1184 59.0
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1280.8 1123 61.4
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1274.2 1208 58.2
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1270.0 1212 58.3
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1265.8 1281 57.6
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1258.0 1226 58.6
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1255.4 1228 57.7
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1251.9 1219 57.8
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1250.3 977 69.6
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1249.2 1073 63.7
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1247.3 1282 56.6
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1244.6 1221 58.3
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1239.2 1217 57.7
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1236.9 1216 57.6
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1233.0 1198 56.9
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1231.1 916 70.3
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1230.3 1214 57.7
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1225.3 1229 56.6
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1224.2 1212 57.5
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1223.4 1212 57.5
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1219.1 1209 56.4
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1214.9 1226 56.7
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1172.1 1067 60.8
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1165.6 1113 58.4
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1159.8 1210 55.4
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1149.0 1183 54.9
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1135.6 1239 52.9
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1134.4 1240 52.0
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 9.6e-303 1043.9 939 60.4
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.6e-302 1042.0 907 63.7
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 7.6e-292 1007.7 1172 49.4
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 2.2e-275 953.0 912 59.4
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 5.3e-261 905.2 1094 48.6
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.3e-235 820.8 849 56.1
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 1.0e-227 794.7 1271 41.3
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.0e-227 792.3 1283 39.9
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.0e-227 792.3 1283 39.9
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 2.4e-221 773.5 523 75.3
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 2.4e-221 773.5 823 53.0
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.5e-207 727.6 908 48.7
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 2.7e-204 716.8 734 56.1
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 4.7e-201 706.1 1313 37.0
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 7.4e-162 575.9 889 43.0
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 1.3e-161 575.1 416 67.8
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 2.3e-155 554.3 581 55.4
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 7.4e-146 522.7 1666 29.8
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 5.5e-125 453.4 433 57.0
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.1e-99 369.4 1114 29.9
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.1e-99 369.4 459 50.8
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 9.9e-90 336.3 217 75.6
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 6.9e-83 313.5 384 50.8
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 6.4e-81 307.0 246 67.1
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.3e-77 294.7 393 47.3
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.1e-72 279.6 697 35.6
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 5.1e-70 270.8 269 56.1
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 3.9e-62 244.6 910 27.8
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 8.2e-44 183.7 164 62.2
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 5.5e-32 144.4 145 58.6
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 9.7e-29 133.7 96 68.8
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.4e-27 129.8 86 72.1
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 4.1e-27 128.3 116 57.8
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 4.7e-23 114.8 94 66.0
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.7e-20 106.3 123 49.6
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.4e-19 102.4 68 67.6
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.7e-18 99.0 60 73.3
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-16 93.6 84 54.8
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-16 93.6 67 64.2
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.5e-10 72.0 70 54.3
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 7.7e-10 70.9 42 71.4


User provided reference genes

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