Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 9.4e-53 209.9 106 100.0
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.1e-19 98.6 76 73.7
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.3e-17 93.2 81 70.4
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 3.7e-17 91.7 76 68.4
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 7.1e-16 87.4 55 81.8
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.6e-15 86.3 71 70.4
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 2.1e-15 85.9 76 65.8
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 3.5e-15 85.1 71 64.8
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 3.5e-15 85.1 57 78.9
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.6e-15 84.7 76 63.2
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.6e-15 84.7 76 63.2
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 7.8e-15 84.0 55 80.0
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 1.3e-14 83.2 71 63.4
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 1.3e-14 83.2 71 63.4
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 2.3e-14 82.4 55 76.4
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 3.0e-14 82.0 71 62.0
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.9e-14 81.6 71 62.0
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 5.1e-14 81.3 71 62.0
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 5.1e-14 81.3 57 73.7
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 6.6e-14 80.9 71 63.4
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 6.6e-14 80.9 55 72.7
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 6.6e-14 80.9 75 65.3
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 6.6e-14 80.9 75 65.3
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 8.6e-14 80.5 71 66.2
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 8.6e-14 80.5 57 73.7
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.1e-13 80.1 55 74.5
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.1e-13 80.1 75 65.3
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.1e-13 80.1 75 65.3
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 1.5e-13 79.7 55 76.4
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.5e-13 79.7 71 64.8
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.5e-13 79.7 71 60.6
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 1.9e-13 79.3 59 69.5
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 2.5e-13 79.0 57 70.2
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 2.5e-13 79.0 75 64.0
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.5e-13 79.0 56 73.2
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 3.3e-13 78.6 57 70.2
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 4.3e-13 78.2 75 61.3
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 4.3e-13 78.2 76 61.8
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 5.6e-13 77.8 71 59.2
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 5.6e-13 77.8 57 70.2
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 7.3e-13 77.4 57 75.4
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 7.3e-13 77.4 57 73.7
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 9.5e-13 77.0 55 74.5
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 9.5e-13 77.0 76 57.9
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 9.5e-13 77.0 57 70.2
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 1.2e-12 76.6 76 59.2
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 1.2e-12 76.6 55 74.5
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.6e-12 76.3 76 59.2
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 2.8e-12 75.5 75 57.3
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 3.6e-12 75.1 57 68.4
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 3.6e-12 75.1 76 59.2
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.6e-12 75.1 57 70.2
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 3.6e-12 75.1 57 68.4
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 3.6e-12 75.1 55 70.9
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 3.6e-12 75.1 76 59.2
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 4.7e-12 74.7 71 57.7
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 4.7e-12 74.7 71 57.7
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 4.7e-12 74.7 71 56.3
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 4.7e-12 74.7 71 59.2
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 6.2e-12 74.3 57 70.2
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 8.1e-12 73.9 57 71.9
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 8.1e-12 73.9 57 68.4
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 8.1e-12 73.9 56 67.9
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.1e-11 73.6 75 58.7
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 1.1e-11 73.6 57 70.2
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.4e-11 73.2 55 72.7
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 1.4e-11 73.2 57 66.7
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.8e-11 72.8 57 68.4
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.8e-11 72.8 57 68.4
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 1.8e-11 72.8 57 68.4
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 2.3e-11 72.4 57 59.6
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 2.3e-11 72.4 56 69.6
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 2.3e-11 72.4 55 70.9
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 3.1e-11 72.0 70 58.6
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 5.2e-11 71.2 57 63.2
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 5.2e-11 71.2 56 66.1
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 8.9e-11 70.5 63 66.7
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 8.9e-11 70.5 92 44.6
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.2e-10 70.1 57 63.2
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.2e-10 70.1 54 64.8
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 1.2e-10 70.1 57 66.7
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 2.6e-10 68.9 56 66.1
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.6e-10 68.9 54 66.7
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 2.6e-10 68.9 54 66.7
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.4e-10 68.6 54 66.7
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 4.4e-10 68.2 55 61.8
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 4.4e-10 68.2 54 63.0
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 5.8e-10 67.8 57 64.9
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 7.6e-10 67.4 58 69.0
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 1.3e-09 66.6 53 64.2
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.2e-09 65.9 77 54.5
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.2e-09 65.9 53 62.3
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.2e-09 65.9 78 51.3
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.2e-09 65.9 78 51.3
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 2.9e-09 65.5 52 65.4
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 3.8e-09 65.1 53 60.4
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 4.9e-09 64.7 49 65.3
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 4.9e-09 64.7 58 58.6
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 4.9e-09 64.7 54 59.3
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 4.9e-09 64.7 54 61.1
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 6.4e-09 64.3 54 57.4
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 6.4e-09 64.3 58 62.1
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 6.4e-09 64.3 54 63.0
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 8.4e-09 63.9 54 68.5
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 8.4e-09 63.9 52 61.5
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 8.4e-09 63.9 75 48.0
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.4e-08 63.2 58 65.5
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 1.4e-08 63.2 55 61.8
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.4e-08 62.4 53 58.5
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.4e-08 62.4 53 58.5
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 2.7e-07 58.9 48 68.8
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 3.5e-07 58.5 54 51.9
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 3.5e-07 58.5 54 51.9
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 3.5e-07 58.5 54 51.9
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 6.0e-07 57.8 54 50.0
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 6.0e-07 57.8 49 63.3
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 7.8e-07 57.4 54 50.0
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 7.8e-07 57.4 58 50.0
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.0e-06 57.0 58 53.4
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.7e-06 56.2 51 56.9
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.3e-06 55.8 52 55.8
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.9e-06 55.1 54 55.6
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 3.9e-06 55.1 48 64.6
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 8.6e-06 53.9 54 48.1


User provided reference genes

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