Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1791.2 862 100.0
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1786.2 862 99.8
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1497.6 866 82.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1493.0 871 81.9
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1378.6 871 75.9
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1357.0 874 75.5
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1353.6 872 76.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1352.0 871 75.0
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1347.8 868 75.1
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1341.6 867 73.9
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1331.2 862 73.7
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1329.7 867 73.4
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1324.7 871 73.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1324.7 860 73.6
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1322.8 868 73.4
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1321.2 864 72.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1320.4 862 73.5
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1320.1 866 72.6
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1317.4 863 72.7
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1312.0 855 72.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1311.2 868 71.7
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1307.0 862 73.0
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1305.4 862 72.9
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1303.9 862 72.9
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 862 71.1
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1287.7 856 71.7
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 867 71.9
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1283.1 870 71.1
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1282.3 862 70.2
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1281.9 866 70.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 860 71.2
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1280.0 862 71.8
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 864 71.4
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 859 71.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1278.5 870 70.2
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1277.7 873 70.6
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 864 71.3
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1271.5 866 70.6
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 874 69.6
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1267.7 862 70.0
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1267.3 858 71.0
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 858 70.7
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1265.4 865 71.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1264.6 860 70.2
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1264.6 859 70.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 861 70.7
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1263.1 879 68.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1263.1 865 70.1
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1261.9 864 70.5
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1260.7 870 68.9
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 872 69.4
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1259.6 862 70.3
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 864 70.5
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 862 70.1
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1256.5 858 70.3
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 868 69.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 860 70.8
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1255.4 868 70.0
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1255.4 875 68.8
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 860 70.3
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1253.8 861 69.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1251.9 861 70.6
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 860 69.9
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 873 68.8
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 865 69.4
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1248.0 858 69.2
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 864 68.3
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 882 68.8
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 864 68.3
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1246.9 864 68.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 865 69.2
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 864 68.2
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 863 70.6
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 868 68.2
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 859 69.0
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 868 68.1
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1242.6 861 70.0
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1241.5 862 68.4
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 868 68.0
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1238.8 874 68.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 887 67.8
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1237.6 859 69.0
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 859 68.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 860 68.7
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 867 68.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 853 68.9
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 861 68.1
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1211.8 827 69.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1134.4 867 63.3
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1121.3 848 64.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1117.1 744 72.8
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1091.3 857 61.5
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 5.8e-310 1067.4 691 72.6
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 8.7e-306 1053.5 647 77.0
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.5e-305 1052.7 856 61.2
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 5.6e-305 1050.8 859 62.6
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 9.3e-300 1033.5 692 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 7.2e-284 980.7 864 55.3
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 6.1e-283 977.6 860 54.2
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.4e-279 965.7 852 55.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.3e-272 943.3 867 52.4
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.7e-205 720.3 760 47.6
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.8e-185 652.1 388 80.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 5.7e-156 555.8 477 58.7
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 5.0e-144 516.2 460 55.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-119 435.3 362 59.7
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 2.4e-101 374.4 307 62.2
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.1e-69 269.2 204 63.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 9.3e-66 256.1 168 72.0
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.7e-54 218.8 161 66.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.4e-50 205.7 169 59.8
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 3.8e-43 181.0 196 52.0
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.7e-35 155.6 216 42.6
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.1e-33 148.7 85 83.5
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.8e-32 143.3 118 60.2
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 4.4e-31 141.0 149 46.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.8e-24 119.0 86 72.1
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.2e-22 112.1 69 72.5
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 7.0e-21 107.1 81 63.0
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.6e-20 105.9 90 58.9
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.5e-18 98.6 112 50.0
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.3e-14 86.3 274 25.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 6.6e-11 73.9 331 24.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 8.6e-11 73.6 381 23.9
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 3.3e-10 71.6 97 46.4
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.3e-10 70.5 329 24.0
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.8e-09 68.6 314 24.5
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.8e-09 68.6 64 51.6
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.0e-08 64.7 33 87.9
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.5e-07 62.8 246 24.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.0e-07 62.4 190 27.9
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 2.6e-07 62.0 182 30.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 2.6e-07 62.0 299 26.4
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 2.2e-06 58.9 301 24.9
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.9e-06 58.5 83 38.6
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.4e-06 57.4 283 21.9


User provided reference genes

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