Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 1.5e-147 526.2 264 100.0
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 6.1e-85 318.2 255 67.1
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 5.9e-80 301.6 245 65.7
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 6.1e-77 291.6 264 59.8
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 8.9e-76 287.7 269 59.9
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 1.3e-63 247.3 261 51.3
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 8.9e-60 234.6 261 52.5
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 3.4e-59 232.6 272 48.9
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 1.7e-58 230.3 277 48.0
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 3.7e-58 229.2 266 49.2
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 4.9e-58 228.8 228 54.8
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 4.1e-57 225.7 261 48.3
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 7.1e-57 224.9 264 49.2
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 6.0e-56 221.9 262 48.9
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.7e-55 220.3 203 57.6
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 2.3e-55 219.9 257 48.2
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 8.6e-55 218.0 181 59.7
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 1.1e-54 217.6 198 57.6
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 2.5e-54 216.5 222 51.4
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 3.3e-54 216.1 181 59.1
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 4.3e-54 215.7 181 58.6
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 7.3e-54 214.9 261 47.1
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 6.2e-53 211.8 248 46.8
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.1e-52 211.1 172 56.4
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 2.3e-52 209.9 213 52.1
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 3.1e-52 209.5 190 53.2
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 8.9e-52 208.0 155 65.2
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 8.9e-52 208.0 252 43.3
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 1.5e-51 207.2 209 51.7
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 2.0e-51 206.8 212 49.5
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 2.9e-50 203.0 204 53.4
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 2.9e-50 203.0 186 53.2
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 6.4e-50 201.8 261 42.9
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 4.1e-49 199.1 238 45.8
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 9.2e-49 198.0 145 66.2
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 1.3e-47 194.1 307 40.1
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 6.6e-47 191.8 176 52.8
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 6.6e-47 191.8 175 57.1
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 7.3e-46 188.3 203 52.7
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 4.7e-45 185.7 167 53.9
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 5.2e-44 182.2 179 51.4
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 2.6e-43 179.9 176 48.3
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 2.9e-42 176.4 265 41.1
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 8.4e-42 174.9 176 49.4
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 1.6e-40 170.6 179 48.0
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 2.1e-40 170.2 164 49.4
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 4.6e-40 169.1 178 48.9
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 1.3e-39 167.5 175 49.1
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 3.0e-39 166.4 265 40.0
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 3.0e-39 166.4 206 45.6
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 3.9e-39 166.0 175 48.6
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 5.1e-39 165.6 141 53.2
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 8.7e-39 164.9 202 44.6
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.5e-38 164.1 256 39.8
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 1.9e-38 163.7 156 51.3
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 2.5e-38 163.3 141 53.2
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.6e-37 160.6 203 43.3
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 4.8e-37 159.1 193 44.0
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 8.1e-37 158.3 205 40.5
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 5.3e-36 155.6 185 46.5
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 6.9e-36 155.2 195 43.6
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 2.0e-35 153.7 222 41.0
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 3.8e-34 149.4 239 41.0
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 3.8e-34 149.4 117 59.0
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 4.9e-34 149.1 166 45.8
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.2e-33 146.4 155 45.2
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 1.2e-32 144.4 172 47.1
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 1.0e-31 141.4 189 45.0
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 5.1e-31 139.0 156 44.9
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 1.9e-30 137.1 130 51.5
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 1.4e-28 131.0 158 46.2
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 2.2e-26 123.6 167 43.1
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 2.4e-25 120.2 125 49.6
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 7.9e-24 115.2 153 43.8
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 2.5e-22 110.2 135 41.5
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 1.3e-21 107.8 91 52.7
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 1.5e-19 100.9 155 34.2
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 3.2e-17 93.2 158 38.0
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 4.2e-17 92.8 155 33.5
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 6.7e-15 85.5 112 37.5
Nn1g01627 Nelumbo nucifera HOM05D002745 ORTHO05D002945 1.5e-14 84.3 186 28.5
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 1.5e-14 84.3 252 28.6
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 5.7e-14 82.4 164 28.7
SEGI_30590 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 5.7e-14 82.4 169 32.5
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.6e-13 80.9 165 27.3
CiPaw.11G131300 Carya illinoinensis HOM05D002745 ORTHO05D002945 1.1e-12 78.2 149 26.2
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 1.8e-12 77.4 185 28.1
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 2.4e-12 77.0 259 27.0
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 6.9e-12 75.5 126 28.6
Sc22g0005360 Simmondsia chinensis HOM05D002745 ORTHO05D002945 6.9e-12 75.5 193 25.4
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 6.9e-12 75.5 78 50.0
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 1.2e-11 74.7 183 27.3
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 1.5e-11 74.3 146 28.8
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 2.6e-11 73.6 183 27.3
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 2.6e-11 73.6 111 36.9
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 5.9e-11 72.4 202 25.7
SEGI_29799 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 5.9e-11 72.4 148 29.1
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 7.6e-11 72.0 143 29.4
Thecc.08G146300 Theobroma cacao HOM05D002745 ORTHO05D002945 2.2e-10 70.5 139 28.8
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 2.9e-10 70.1 138 26.8
CARHR291200 Cardamine hirsuta HOM05D002745 ORTHO05D002945 3.8e-10 69.7 107 31.8
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 3.8e-10 69.7 118 28.0
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 3.8e-10 69.7 133 27.8
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 3.8e-10 69.7 138 27.5
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 3.8e-10 69.7 181 26.5
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 5.0e-10 69.3 181 26.0
Carub.0002s1834 Capsella rubella HOM05D002745 ORTHO05D002945 6.5e-10 68.9 149 28.9
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 8.5e-10 68.6 181 26.0
AL2G31140 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 1.1e-09 68.2 107 32.7
AT1G71480 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 1.4e-09 67.8 107 31.8
FvH4_5g33211 Fragaria vesca HOM05D002745 ORTHO05D002945 1.4e-09 67.8 123 30.1
FAN18G3413 Fragaria x ananassa HOM05D000972 ORTHO05D007902 1.4e-09 67.8 123 30.1
Lsat_1_v5_gn_4_62060 Lactuca sativa HOM05D007829 ORTHO05D009903 1.4e-09 67.8 78 46.2
Thhalv10019116m.g Eutrema salsugineum HOM05D002745 ORTHO05D002945 1.9e-09 67.4 119 31.1
FAN08G1704 Fragaria x ananassa HOM05D002745 ORTHO05D002945 3.2e-09 66.6 112 31.2
Sp5g26630 Schrenkiella parvula HOM05D002745 ORTHO05D002945 3.2e-09 66.6 107 31.8
HanXRQChr17g0559011 Helianthus annuus HOM05D002745 ORTHO05D002945 4.2e-09 66.2 146 29.5
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 4.2e-09 66.2 83 34.9
ATR1089G026 Amborella trichopoda HOM05D002745 ORTHO05D002945 5.5e-09 65.9 128 28.9
MD06G1089000 Malus domestica HOM05D002745 ORTHO05D002945 5.5e-09 65.9 119 26.1
CANSAT56G3529 Cannabis sativa HOM05D002745 ORTHO05D002945 7.2e-09 65.5 119 29.4
CAN.G1039.10 Capsicum annuum HOM05D002745 ORTHO05D002945 7.2e-09 65.5 110 30.0
Sopen12g028700 Solanum pennellii HOM05D002745 ORTHO05D002945 9.3e-09 65.1 182 25.8
BraA07t31339Z Brassica rapa HOM05D002745 ORTHO05D002945 1.2e-08 64.7 138 30.4
Nitab4.5_0005586g0050 Nicotiana tabacum HOM05D002745 ORTHO05D002945 1.2e-08 64.7 163 26.4
BolC6t39614H Brassica oleracea HOM05D002745 ORTHO05D002945 1.6e-08 64.3 134 29.9
Solyc08g081450.4 Solanum lycopersicum HOM05D002745 ORTHO05D002945 1.6e-08 64.3 215 23.7
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 2.1e-08 63.9 97 28.9
C06p45630 Brassica napus HOM05D002745 ORTHO05D002945 2.1e-08 63.9 134 29.9
Glyma.01G221700 Glycine max HOM05D002745 ORTHO05D002945 2.1e-08 63.9 201 22.9
Lsat_1_v5_gn_4_133100 Lactuca sativa HOM05D002745 ORTHO05D002945 2.1e-08 63.9 149 28.2
QL02p024910 Quercus lobata HOM05D002745 ORTHO05D002945 2.1e-08 63.9 127 29.9
Peaxi162Scf00078g00352 Petunia axillaris HOM05D002745 ORTHO05D002945 2.7e-08 63.5 116 31.9
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 3.6e-08 63.2 107 30.8
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 3.6e-08 63.2 187 24.6
Prupe.8G022100 Prunus persica HOM05D002745 ORTHO05D002945 4.6e-08 62.8 138 27.5
arahy.Tifrunner.gnm1.ann1.TL04YN Arachis hypogaea HOM05D002745 ORTHO05D002945 6.1e-08 62.4 201 25.4
Cpa.g.sc21.67 Carica papaya HOM05D002745 ORTHO05D002945 6.1e-08 62.4 119 30.3
Prupe.1G545800 Prunus persica HOM05D002745 ORTHO05D002945 6.1e-08 62.4 179 26.3
SGA_v2.0_scaffold118G32594 Striga asiatica HOM05D002745 ORTHO05D002945 6.1e-08 62.4 140 27.1
Ah.07g196580 Amaranthus hybridus HOM05D002745 ORTHO05D002945 7.9e-08 62.0 142 28.9
AUR62019734 Chenopodium quinoa HOM05D002745 ORTHO05D002945 7.9e-08 62.0 207 23.7
PGSC0003DMG400012326 Solanum tuberosum HOM05D002745 ORTHO05D002945 1.0e-07 61.6 142 25.4
BcaC08g45773 Brassica carinata HOM05D002745 ORTHO05D002945 1.3e-07 61.2 121 29.8
LjContig00222g0027382 Lotus japonicus HOM05D002745 ORTHO05D002945 2.3e-07 60.5 140 27.1
ATR0712G092 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.0e-07 60.1 64 45.3
CiPaw.03G016400 Carya illinoinensis HOM05D002745 ORTHO05D002945 3.9e-07 59.7 119 28.6
AUR62010728 Chenopodium quinoa HOM05D002745 ORTHO05D002945 3.9e-07 59.7 135 28.9
ECA232G4303 Erigeron canadensis HOM05D000972 ORTHO05D007902 3.9e-07 59.7 119 28.6
Nitab4.5_0015422g0020 Nicotiana tabacum HOM05D007829 ORTHO05D009903 3.9e-07 59.7 43 60.5
Oeu049859.2 Olea europaea HOM05D002745 ORTHO05D002945 3.9e-07 59.7 179 24.0
Prupe.5G104900 Prunus persica HOM05D002745 ORTHO05D002945 3.9e-07 59.7 128 25.8
Atru.chr13.2449 Acer truncatum HOM05D002745 ORTHO05D002945 6.7e-07 58.9 140 26.4
arahy.Tifrunner.gnm1.ann1.IX2F7U Arachis hypogaea HOM05D002745 ORTHO05D002945 6.7e-07 58.9 202 24.8
Oeu031426.3 Olea europaea HOM05D002745 ORTHO05D002945 6.7e-07 58.9 178 24.2
RcHm_v2.0_Chr7g0196861 Rosa chinensis HOM05D002745 ORTHO05D002945 6.7e-07 58.9 109 28.4
Sed0004172 Sechium edule HOM05D002745 ORTHO05D002945 8.7e-07 58.5 149 24.8
Actinidia27369 Actinidia chinensis HOM05D002745 ORTHO05D002945 1.5e-06 57.8 148 24.3
GSVIVG01003332001 Vitis vinifera HOM05D053186 ORTHO05D051625 1.9e-06 57.4 72 44.4
A07p30690 Brassica napus HOM05D002745 ORTHO05D002945 2.5e-06 57.0 128 28.1
BraA07t30707Z Brassica rapa HOM05D002745 ORTHO05D002945 2.5e-06 57.0 128 28.1
MELO3C005702.2 Cucumis melo HOM05D002745 ORTHO05D002945 5.7e-06 55.8 149 27.5
ClCG01G002430 Citrullus lanatus HOM05D002745 ORTHO05D002945 7.4e-06 55.5 146 25.3
TAR374G0018 Trochodendron aralioides HOM05D002745 ORTHO05D002945 7.4e-06 55.5 80 28.8
Haze_08826 Corylus avellana HOM05D002745 ORTHO05D002945 9.7e-06 55.1 82 32.9


User provided reference genes

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