Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 0.0e+00 1390.9 763 100.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 0.0e+00 1377.5 763 99.3
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 5.7e-285 984.2 795 72.8
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 2.1e-271 939.1 938 63.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 4.7e-271 937.9 826 69.0
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 9.2e-267 923.7 789 72.0
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.9e-265 918.3 796 69.6
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.9e-259 899.4 792 68.7
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 1.2e-255 886.7 794 67.1
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 4.9e-252 874.8 774 68.0
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.9e-248 862.8 773 66.6
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.9e-248 862.8 773 66.5
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 8.1e-247 857.4 811 64.4
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 8.7e-241 837.4 788 64.5
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.3e-238 828.2 787 63.0
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.4e-237 825.5 789 64.1
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 7.6e-237 824.3 797 63.5
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 5.4e-235 818.1 794 62.6
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.3e-231 807.0 783 62.6
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.5e-229 800.0 805 61.9
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.0e-228 797.3 792 63.6
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 6.0e-226 788.1 776 64.4
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 6.7e-225 784.6 822 59.5
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 2.4e-222 776.2 771 61.2
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 2.0e-221 773.1 777 61.8
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.2e-219 765.8 776 62.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 1.2e-218 763.8 796 61.2
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.1e-217 758.4 764 61.1
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 1.1e-216 757.3 718 64.3
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.4e-214 750.4 780 60.9
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 4.1e-214 748.8 777 59.5
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 9.0e-214 747.7 772 59.6
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.0e-212 744.2 775 59.1
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.7e-212 743.4 775 60.9
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 2.2e-212 743.0 782 59.3
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-211 740.0 775 60.6
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.5e-211 739.6 784 60.3
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.5e-211 738.4 784 60.2
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 5.5e-211 738.4 784 59.1
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.6e-210 736.9 792 59.0
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 4.6e-210 735.3 811 58.2
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.3e-208 729.2 772 59.3
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.8e-206 723.4 794 58.4
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 5.3e-206 721.8 799 57.8
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.9e-206 721.5 799 58.3
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.5e-205 720.3 788 60.0
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.9e-204 716.1 802 57.2
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 6.5e-204 714.9 782 58.1
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 8.5e-204 714.5 770 59.6
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 4.2e-203 712.2 812 57.5
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 3.9e-201 705.7 793 56.0
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 3.9e-201 705.7 815 56.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.3e-200 702.6 780 56.8
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 9.7e-200 701.0 791 57.0
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 4.8e-199 698.7 799 56.9
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 9.1e-198 694.5 780 56.3
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.2e-197 694.1 798 56.5
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 2.6e-197 693.0 778 58.0
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 1.0e-196 691.0 778 57.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.0e-196 688.7 771 56.9
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 8.5e-196 688.0 780 56.2
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 3.2e-195 686.0 789 56.7
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 3.2e-195 686.0 786 56.7
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 8.0e-194 681.4 784 56.5
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 3.0e-193 679.5 767 57.0
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 3.0e-193 679.5 789 55.8
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 6.7e-193 678.3 779 55.2
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 8.8e-193 677.9 776 56.8
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 4.4e-192 675.6 785 56.2
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 4.1e-190 669.1 779 55.6
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 3.8e-188 662.5 782 55.4
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 8.5e-188 661.4 775 55.0
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.2e-187 659.1 768 55.6
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 5.5e-187 658.7 801 54.4
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.6e-184 649.8 708 57.5
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 5.7e-184 648.7 852 50.7
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 8.3e-183 644.8 776 54.4
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 4.1e-182 642.5 824 53.5
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.6e-181 640.6 773 54.6
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 3.8e-180 636.0 696 58.0
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 8.0e-178 628.2 781 53.9
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.3e-177 626.7 777 53.4
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.2e-176 624.4 791 53.7
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.0e-173 613.6 781 52.8
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 4.5e-173 612.5 778 51.8
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.0e-172 611.3 784 53.2
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.1e-171 607.8 610 61.5
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 2.5e-171 606.7 794 52.5
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 9.5e-171 604.7 610 61.1
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.2e-170 604.4 782 51.7
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 8.0e-170 601.7 528 66.9
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 3.5e-165 586.3 774 50.4
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.6e-165 585.9 606 60.2
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 5.9e-165 585.5 781 50.7
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.9e-163 580.5 776 49.7
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 9.5e-163 578.2 631 58.0
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.2e-162 577.8 778 48.6
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.8e-162 576.6 778 49.2
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.5e-160 570.9 782 51.0
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.4e-160 569.7 784 49.0
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 4.9e-159 565.8 832 47.4
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 8.3e-159 565.1 704 53.4
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 4.7e-154 549.3 769 47.2
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.7e-154 549.3 781 48.8
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-153 546.6 785 47.9
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 3.1e-153 546.6 785 47.9
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 5.2e-153 545.8 785 47.9
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 8.9e-153 545.0 785 48.2
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 8.9e-153 545.0 805 48.3
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 2.2e-151 540.4 785 48.0
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 3.7e-151 539.7 772 47.4
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.1e-150 538.1 685 49.9
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 2.4e-150 537.0 798 46.1
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.2e-149 534.6 784 47.7
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 3.5e-149 533.1 698 49.4
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 4.6e-149 532.7 771 46.4
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 3.9e-148 529.6 746 50.0
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 6.6e-148 528.9 520 61.0
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.9e-147 527.3 768 47.1
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.8e-145 520.8 786 45.7
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 5.8e-144 515.8 793 47.0
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 1.2e-141 508.1 768 46.5
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 1.7e-140 504.2 778 45.8
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 3.0e-140 503.4 783 47.1
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 3.9e-140 503.1 701 48.9
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.5e-139 501.1 775 44.9
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 8.1e-138 495.4 688 48.0
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 2.2e-135 487.3 757 45.4
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 7.1e-134 482.3 670 48.4
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 3.0e-132 476.9 783 45.7
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.0e-132 476.9 744 44.4
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 7.4e-123 445.7 597 48.9
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.3e-111 408.3 498 53.2
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-105 387.9 702 41.9
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 4.1e-105 386.7 377 62.3
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 8.7e-100 369.0 349 61.6
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 2.5e-99 367.5 360 63.1
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.4e-97 361.7 382 59.2
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.8e-97 361.3 850 36.2
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 4.5e-88 330.1 388 52.3
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.5e-87 325.9 399 55.1
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.8e-82 310.8 395 54.7
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-64 252.3 251 61.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.6e-64 251.9 337 52.2
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 7.2e-62 243.0 769 32.0
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.9e-54 218.4 190 69.5
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.0e-51 208.4 761 30.1
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 5.9e-48 196.8 324 40.4
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 2.6e-43 181.4 170 65.9
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 7.8e-40 169.9 145 60.7
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.5e-35 155.6 179 56.4
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 7.5e-35 153.3 138 61.6
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 4.1e-33 147.5 182 53.3
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 2.3e-28 131.7 264 38.6
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.5e-27 129.0 370 32.2
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 3.8e-26 124.4 107 66.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-23 115.2 308 32.8
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.0e-23 114.8 118 55.1
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.6e-23 113.2 85 72.9
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.4e-20 105.9 143 58.0
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.4e-17 95.9 62 83.9
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 9.3e-17 93.2 241 33.2
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 3.0e-15 88.2 207 36.2
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 8.7e-15 86.7 76 61.8
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.3e-13 82.8 67 65.7
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.3e-13 82.8 76 59.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 5.3e-12 77.4 260 30.4
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 2.6e-11 75.1 224 31.2
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 6.4e-10 70.5 119 43.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.4e-09 68.6 474 27.2
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 2.3e-07 62.0 66 56.1
arahy.Tifrunner.gnm1.ann1.2H8IEQ Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-06 58.5 66 54.5
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-06 58.5 66 54.5
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.3e-06 58.2 66 53.0
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.3e-06 58.2 66 53.0
arahy.Tifrunner.gnm1.ann1.BE33XR Arachis hypogaea HOM05D003721 ORTHO05D004303 4.3e-06 57.8 63 54.0
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 5.6e-06 57.4 315 29.2


User provided reference genes

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