Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.8e-238 827.4 412 100.0
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 3.3e-194 681.8 448 80.4
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 1.4e-176 623.2 454 70.3
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 1.6e-172 609.8 457 68.7
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 2.7e-172 609.0 461 69.2
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 2.2e-166 589.3 457 66.1
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 2.9e-166 589.0 460 65.4
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.0e-166 588.2 473 66.2
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 1.4e-165 586.6 457 65.9
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 7.1e-165 584.3 457 65.6
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 1.6e-164 583.2 460 66.7
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 7.9e-164 580.9 457 65.9
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 1.5e-162 576.6 460 66.1
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 1.3e-161 573.5 455 64.4
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 3.7e-161 572.0 457 64.8
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 6.3e-161 571.2 457 63.9
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 6.3e-161 571.2 461 66.6
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 1.2e-159 567.0 458 66.4
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 1.3e-158 563.5 462 64.5
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 6.5e-158 561.2 460 64.8
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 6.5e-158 561.2 461 64.4
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 7.2e-157 557.8 460 63.9
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 2.1e-156 556.2 455 63.3
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 6.1e-156 554.7 458 64.8
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 7.9e-156 554.3 458 64.6
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 7.9e-156 554.3 458 62.7
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 1.4e-155 553.5 455 64.2
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 1.8e-155 553.1 463 62.4
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 2.3e-155 552.7 458 64.4
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 3.9e-155 552.0 455 63.1
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 3.9e-155 552.0 460 62.4
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 8.8e-155 550.8 472 63.6
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 8.8e-155 550.8 461 64.2
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 5.7e-154 548.1 455 65.1
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.2e-153 546.2 454 64.8
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 4.8e-153 545.0 460 62.6
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 8.2e-153 544.3 443 64.8
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.1e-152 543.9 464 61.6
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.1e-152 543.9 455 62.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 1.8e-152 543.1 477 61.0
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 2.4e-152 542.7 461 63.1
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.2e-151 540.4 460 62.6
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 2.0e-151 539.7 468 63.2
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 7.7e-151 537.7 461 62.7
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 1.0e-150 537.3 461 62.0
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 1.0e-150 537.3 461 62.5
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 1.3e-150 537.0 448 62.9
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 1.7e-150 536.6 461 62.5
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.2e-150 536.2 466 62.0
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.9e-150 535.8 455 62.2
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 3.8e-150 535.4 461 62.3
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 6.5e-150 534.6 461 62.0
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 6.5e-150 534.6 466 61.8
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 1.1e-149 533.9 459 61.4
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 2.5e-149 532.7 461 62.5
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 3.2e-149 532.3 461 61.8
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 4.2e-149 531.9 460 62.2
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 4.2e-149 531.9 460 62.0
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 5.5e-149 531.6 463 60.0
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 5.5e-149 531.6 463 60.5
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 2.7e-148 529.3 452 62.4
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 4.7e-148 528.5 464 60.6
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 7.9e-148 527.7 463 59.2
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 7.9e-148 527.7 455 61.8
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 7.9e-148 527.7 455 61.8
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 1.0e-147 527.3 468 60.3
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 1.4e-147 526.9 454 62.6
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 3.9e-147 525.4 461 61.6
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 6.7e-147 524.6 475 60.4
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 1.1e-146 523.9 459 60.1
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 3.3e-146 522.3 460 59.6
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 4.4e-146 521.9 458 59.4
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 9.7e-146 520.8 455 62.4
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 3.7e-145 518.8 455 61.3
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 7.0e-144 514.6 459 59.5
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 7.0e-144 514.6 462 60.0
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 9.1e-144 514.2 439 64.7
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.2e-143 513.8 461 59.2
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.5e-143 513.5 457 60.4
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 5.9e-143 511.5 502 55.4
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 7.7e-143 511.1 462 59.5
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 5.0e-142 508.4 451 59.2
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 4.2e-141 505.4 472 57.8
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 2.7e-140 502.7 426 62.9
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 3.6e-140 502.3 464 57.8
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 2.3e-139 499.6 442 60.6
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 6.7e-139 498.0 505 55.2
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 1.6e-132 476.9 459 55.3
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.3e-131 473.0 410 60.2
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 6.3e-129 464.9 401 60.8
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 2.4e-128 463.0 456 52.9
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 1.2e-122 444.1 296 77.0
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 1.3e-121 440.7 411 57.4
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 2.4e-120 436.4 464 52.8
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 4.5e-119 432.2 462 52.4
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 5.0e-118 428.7 427 56.2
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 3.0e-115 419.5 299 72.2
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 2.4e-112 409.8 471 50.7
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 2.5e-109 399.8 449 47.4
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.1e-107 392.9 302 69.5
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 4.1e-104 382.5 296 63.9
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 7.0e-104 381.7 408 53.4
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 6.0e-95 352.1 236 72.5
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 7.8e-87 325.1 332 56.0
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.9e-85 320.5 283 61.5
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 7.3e-85 318.5 417 48.9
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.1e-84 317.0 297 58.6
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.0e-78 298.1 303 55.4
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 9.9e-74 281.6 454 40.1
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 1.9e-72 277.3 451 37.5
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 1.0e-70 271.6 398 42.7
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 5.1e-70 269.2 230 64.3
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 3.8e-65 253.1 474 35.0
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 4.6e-63 246.1 455 35.8
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 8.5e-49 198.7 227 47.6
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 2.0e-42 177.6 161 64.0
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 9.4e-40 168.7 230 45.2
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 3.6e-39 166.8 131 64.9
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 3.8e-33 146.7 256 34.4
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 7.9e-31 139.0 118 61.0
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 7.4e-29 132.5 134 55.2
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 7.0e-27 125.9 118 61.0
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 2.0e-26 124.4 117 57.3
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 1.0e-25 122.1 102 63.7
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 3.8e-25 120.2 114 57.0
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 1.1e-24 118.6 114 57.0
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 6.8e-14 82.8 177 36.2
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.5e-13 81.6 52 76.9
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 1.3e-12 78.6 102 47.1
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 9.1e-11 72.4 247 25.9
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 1.0e-09 68.9 54 66.7


User provided reference genes

Program Settings