Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014179 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 1.1e-61 240.0 131 100.0
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 9.6e-23 110.5 145 51.7
Rhsim13G0087400 Rhododendron simsii HOM05D002619 ORTHO05D002804 1.2e-20 103.6 131 52.7
vmacro03117 Vaccinium macrocarpon HOM05D002619 ORTHO05D002804 3.4e-20 102.1 130 53.8
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 2.2e-19 99.4 136 46.3
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 3.2e-18 95.5 133 55.6
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 9.3e-18 94.0 134 53.0
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.5e-17 92.0 137 43.1
Lj2P1052T44 Lonicera japonica HOM05D002619 ORTHO05D002804 3.0e-16 89.0 145 50.3
Haze_24026 Corylus avellana HOM05D002619 ORTHO05D002804 3.9e-16 88.6 144 48.6
Sabra09G0018200 Salix brachista HOM05D002619 ORTHO05D002804 3.9e-16 88.6 138 41.3
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 6.7e-16 87.8 139 48.9
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 8.7e-16 87.4 142 48.6
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 2.5e-15 85.9 144 40.3
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 3.3e-15 85.5 130 48.5
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 4.3e-15 85.1 143 46.2
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 4.3e-15 85.1 132 39.4
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 9.6e-15 84.0 120 43.3
Potri.006G256801 Populus trichocarpa HOM05D002619 ORTHO05D002804 2.1e-14 82.8 128 52.3
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 2.1e-14 82.8 141 38.3
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 2.8e-14 82.4 132 50.0
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 2.8e-14 82.4 124 41.1
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 6.3e-14 81.3 139 48.2
Actinidia07071 Actinidia chinensis HOM05D002619 ORTHO05D002804 1.1e-13 80.5 110 44.5
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 1.1e-13 80.5 127 51.2
Prupe.6G085300 Prunus persica HOM05D002619 ORTHO05D002804 1.1e-13 80.5 145 46.2
Cpa.g.sc252.23 Carica papaya HOM05D002619 ORTHO05D002804 1.4e-13 80.1 147 49.0
TAR633G1544 Trochodendron aralioides HOM05D002619 ORTHO05D002804 3.1e-13 79.0 142 46.5
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 5.3e-13 78.2 146 45.9
PSO339G4672 Papaver somniferum HOM05D002619 ORTHO05D002804 5.3e-13 78.2 133 48.1
DCAR_005304 Daucus carota HOM05D002619 ORTHO05D002804 6.9e-13 77.8 140 36.4
PSO206G0036 Papaver somniferum HOM05D002619 ORTHO05D002804 1.2e-12 77.0 134 48.5
QL01p033488 Quercus lobata HOM05D002619 ORTHO05D002804 1.2e-12 77.0 143 46.9
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.4e-12 75.5 134 40.3
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 3.4e-12 75.5 139 46.0
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.5e-12 75.1 131 44.3
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 4.5e-12 75.1 138 39.1
Duzib168G0755 Durio zibethinus HOM05D002619 ORTHO05D002804 5.9e-12 74.7 144 44.4
TAR369G0856 Trochodendron aralioides HOM05D002619 ORTHO05D002804 1.0e-11 73.9 147 45.6
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 1.3e-11 73.6 147 46.3
MD03G1100400 Malus domestica HOM05D002619 ORTHO05D002804 2.2e-11 72.8 146 44.5
Oeu041011.1 Olea europaea HOM05D002619 ORTHO05D002804 2.2e-11 72.8 142 35.2
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 2.9e-11 72.4 147 44.2
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 6.5e-11 71.2 147 46.3
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 6.5e-11 71.2 141 36.9
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 6.5e-11 71.2 134 50.0
DCAR_006005 Daucus carota HOM05D002619 ORTHO05D002804 1.1e-10 70.5 138 43.5
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.1e-10 70.5 139 41.7
Rhsim01G0224500 Rhododendron simsii HOM05D002619 ORTHO05D002804 1.1e-10 70.5 146 45.2
FAN10G0678 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.4e-10 70.1 145 40.7
FAN10G0879 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.4e-10 70.1 145 40.7
Oeu040288.1 Olea europaea HOM05D002619 ORTHO05D002804 1.4e-10 70.1 128 42.2
Ciclev10029033m.g Citrus clementina HOM05D002619 ORTHO05D002804 1.9e-10 69.7 132 47.0
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 1.9e-10 69.7 150 33.3
Lsat_1_v5_gn_5_166460 Lactuca sativa HOM05D002619 ORTHO05D002804 1.9e-10 69.7 152 44.1
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 3.2e-10 68.9 141 41.1
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.2e-10 68.9 140 35.7
CiPaw.13G099700 Carya illinoinensis HOM05D002619 ORTHO05D002804 4.2e-10 68.6 139 46.8
FvH4_7g31020 Fragaria vesca HOM05D000469 ORTHO05D000323 4.2e-10 68.6 145 42.8
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 5.5e-10 68.2 144 45.1
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 7.2e-10 67.8 142 33.1
Sabra18G0027500 Salix brachista HOM05D002619 ORTHO05D002804 7.2e-10 67.8 128 45.3
MSTRG.18597 Avicennia marina HOM05D002619 ORTHO05D002804 9.3e-10 67.4 142 35.2
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 9.3e-10 67.4 135 36.3
ClCG02G020460 Citrullus lanatus HOM05D002619 ORTHO05D002804 9.3e-10 67.4 144 43.8
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 9.3e-10 67.4 147 43.5
FAN06G0142 Fragaria x ananassa HOM05D002619 ORTHO05D002804 9.3e-10 67.4 145 42.8
FAN03G1777 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.2e-09 67.0 147 42.9
Hund18942 Selenicereus undatus HOM05D002619 ORTHO05D002804 1.2e-09 67.0 153 32.7
TWI31G0042 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.2e-09 67.0 142 33.8
MELO3C013675.2 Cucumis melo HOM05D002619 ORTHO05D002804 1.6e-09 66.6 147 42.9
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.6e-09 66.6 133 37.6
CsaV3_1G033710 Cucumis sativus L. HOM05D002619 ORTHO05D002804 2.1e-09 66.2 135 45.2
Duzib150G0531 Durio zibethinus HOM05D002619 ORTHO05D002804 2.7e-09 65.9 146 41.8
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 2.7e-09 65.9 133 37.6
FAN06G4008 Fragaria x ananassa HOM05D002619 ORTHO05D002804 3.5e-09 65.5 145 42.1
Peaxi162Scf00356g00031 Petunia axillaris HOM05D002619 ORTHO05D002804 4.6e-09 65.1 138 41.3
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 4.6e-09 65.1 142 35.9
SalBow2G0511 Salvia bowleyana HOM05D002619 ORTHO05D002804 4.6e-09 65.1 130 43.1
MELO3C020695.2 Cucumis melo HOM05D002619 ORTHO05D002804 6.1e-09 64.7 66 74.2
TWI79G1700 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 6.1e-09 64.7 61 70.5
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 7.9e-09 64.3 138 43.5
Aqoxy4G03023 Aquilegia oxysepala HOM05D002619 ORTHO05D002804 1.0e-08 63.9 142 34.5
Manes.04G030300 Manihot esculenta HOM05D002619 ORTHO05D002804 1.0e-08 63.9 146 43.8
Solyc06g005300.4 Solanum lycopersicum HOM05D002619 ORTHO05D002804 1.8e-08 63.2 130 37.7
Atru.chr3.3814 Acer truncatum HOM05D002619 ORTHO05D002804 2.3e-08 62.8 154 39.6
ClCG03G001850 Citrullus lanatus HOM05D002619 ORTHO05D002804 2.3e-08 62.8 101 56.4
CsaV3_6G022160 Cucumis sativus L. HOM05D002619 ORTHO05D002804 2.3e-08 62.8 145 41.4
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 2.3e-08 62.8 136 34.6
MD11G1114400 Malus domestica HOM05D002619 ORTHO05D002804 3.0e-08 62.4 82 56.1
DCAR_015599 Daucus carota HOM05D002619 ORTHO05D002804 3.9e-08 62.0 143 32.9
Hund05001 Selenicereus undatus HOM05D002619 ORTHO05D002804 6.7e-08 61.2 132 37.9
Sed0011374 Sechium edule HOM05D002619 ORTHO05D002804 1.1e-07 60.5 144 43.1
Eucgr.J02075 Eucalyptus grandis HOM05D002619 ORTHO05D002804 1.5e-07 60.1 64 48.4
FvH4_3g34910 Fragaria vesca HOM05D002619 ORTHO05D002804 1.5e-07 60.1 61 67.2
FAN11G0006 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.5e-07 60.1 61 67.2
FAN21G0578 Fragaria x ananassa HOM05D002619 ORTHO05D002804 1.5e-07 60.1 61 67.2
RcHm_v2.0_Chr5g0062781 Rosa chinensis HOM05D002619 ORTHO05D002804 1.5e-07 60.1 61 50.8
TWI75G1695 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 1.9e-07 59.7 141 38.3
CAN.G241.40 Capsicum annuum HOM05D002619 ORTHO05D002804 2.5e-07 59.3 140 39.3
Gorai.013G265500 Gossypium raimondii HOM05D002619 ORTHO05D002804 2.5e-07 59.3 105 46.7
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 2.5e-07 59.3 59 49.2
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 2.5e-07 59.3 102 38.2
THA.LOC104815768 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 2.5e-07 59.3 83 49.4
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 3.3e-07 58.9 61 68.9
Potri.018G024900 Populus trichocarpa HOM05D002619 ORTHO05D002804 3.3e-07 58.9 134 34.3
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 3.3e-07 58.9 128 38.3
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.3e-07 58.5 61 47.5
CDE02G0555 Ceratophyllum demersum HOM05D002619 ORTHO05D002804 5.7e-07 58.2 77 54.5
Nn5g30962 Nelumbo nucifera HOM05D001927 ORTHO05D001972 5.7e-07 58.2 61 68.9
AT2G28690 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 9.7e-07 57.4 62 59.7
BcaB01g03117 Brassica carinata HOM05D002619 ORTHO05D002804 9.7e-07 57.4 62 59.7
BcaNung06778 Brassica carinata HOM05D002619 ORTHO05D002804 9.7e-07 57.4 62 59.7
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.3e-06 57.0 65 60.0
THA.LOC104800642 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 1.3e-06 57.0 97 48.5
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 1.6e-06 56.6 61 47.5
Sc12g0001720 Simmondsia chinensis HOM05D002619 ORTHO05D002804 1.6e-06 56.6 137 38.0
Carub.0004s0969 Capsella rubella HOM05D002619 ORTHO05D002804 2.2e-06 56.2 57 64.9
Thhalv10017181m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 3.7e-06 55.5 56 66.1
FAN01G2443 Fragaria x ananassa HOM05D002619 ORTHO05D002804 3.7e-06 55.5 145 40.7
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 4.8e-06 55.1 138 30.4
FAN25G3511 Fragaria x ananassa HOM05D002619 ORTHO05D002804 4.8e-06 55.1 61 47.5
AL4G23230 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 6.3e-06 54.7 62 58.1
FAN16G1521 Fragaria x ananassa HOM05D002619 ORTHO05D002804 6.3e-06 54.7 61 63.9
Medtr2g084270 Medicago truncatula HOM05D002307 ORTHO05D002378 6.3e-06 54.7 71 56.3
Aa31LG5G7520 Aethionema arabicum HOM05D002619 ORTHO05D002804 8.2e-06 54.3 57 59.6
A07p19190 Brassica napus HOM05D002619 ORTHO05D002804 8.2e-06 54.3 62 59.7
BraA07t29626Z Brassica rapa HOM05D002619 ORTHO05D002804 8.2e-06 54.3 62 59.7
CARHR121800 Cardamine hirsuta HOM05D002619 ORTHO05D002804 8.2e-06 54.3 91 46.2


User provided reference genes

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