Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 6.8e-125 450.7 228 100.0
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.9e-96 355.1 188 92.0
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 6.1e-65 251.5 220 61.8
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 1.1e-63 247.3 197 66.0
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 3.2e-58 229.2 199 62.8
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 5.2e-56 221.9 196 62.8
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 2.6e-55 219.5 199 60.8
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 3.3e-55 219.2 196 62.8
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 7.4e-55 218.0 199 62.3
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 6.3e-54 214.9 193 59.1
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.4e-53 213.8 199 59.8
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.4e-53 213.8 206 57.3
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.4e-53 213.8 206 57.3
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.2e-52 210.7 196 63.8
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 3.5e-52 209.1 199 58.3
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 3.8e-51 205.7 209 56.9
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 5.0e-51 205.3 204 55.4
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 1.9e-50 203.4 225 53.3
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.5e-50 203.0 176 62.5
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 5.5e-50 201.8 191 58.6
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 5.5e-50 201.8 190 57.9
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 7.2e-50 201.4 205 56.6
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 1.6e-49 200.3 188 61.7
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.7e-49 199.5 183 59.6
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 4.7e-49 198.7 223 52.0
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 1.8e-48 196.8 128 74.2
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 2.3e-48 196.4 198 57.1
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 4.0e-48 195.7 128 73.4
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 4.0e-48 195.7 197 56.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 5.2e-48 195.3 227 52.9
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 6.8e-48 194.9 197 57.9
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 8.8e-48 194.5 140 67.9
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 5.7e-47 191.8 198 55.1
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 5.7e-47 191.8 208 53.4
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.7e-46 190.3 134 70.9
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.7e-46 190.3 200 54.0
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 2.8e-46 189.5 195 54.4
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 6.3e-46 188.3 195 52.8
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 8.3e-46 188.0 197 55.3
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.1e-45 187.6 141 64.5
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.8e-45 186.8 126 69.8
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 4.1e-45 185.7 209 55.5
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 9.1e-45 184.5 185 54.6
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 1.2e-44 184.1 137 66.4
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 1.2e-44 184.1 137 66.4
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 3.5e-44 182.6 165 57.0
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 3.5e-44 182.6 123 73.2
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 7.7e-44 181.4 167 55.7
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 1.3e-43 180.6 137 65.0
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.7e-43 180.3 179 53.1
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.9e-43 179.5 206 51.5
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.9e-43 179.5 165 56.4
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 1.1e-42 177.6 196 54.1
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.9e-42 176.8 212 48.6
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.9e-42 176.8 195 50.8
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 5.5e-42 175.3 195 50.8
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 9.4e-42 174.5 196 50.5
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 8.0e-41 171.4 104 78.8
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 5.2e-40 168.7 171 55.6
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 6.8e-40 168.3 221 46.2
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 1.2e-39 167.5 159 54.7
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 1.2e-39 167.5 159 54.7
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.5e-39 167.2 162 54.3
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.0e-39 166.8 219 46.1
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 2.6e-39 166.4 131 62.6
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 5.7e-39 165.2 163 55.2
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 9.8e-39 164.5 142 61.3
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 2.8e-38 162.9 114 70.2
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 2.8e-38 162.9 127 63.0
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 3.7e-38 162.5 172 53.5
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 6.3e-38 161.8 179 50.8
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 6.3e-38 161.8 114 67.5
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 8.3e-38 161.4 197 49.2
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 1.1e-37 161.0 161 55.9
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.1e-37 161.0 205 45.9
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 1.4e-37 160.6 123 64.2
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 2.4e-37 159.8 202 48.0
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 2.4e-37 159.8 202 48.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 4.1e-37 159.1 158 55.1
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 5.4e-37 158.7 194 49.0
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 7.0e-37 158.3 119 65.5
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.2e-36 157.5 200 49.5
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.2e-36 157.5 118 61.9
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.6e-36 157.1 201 46.8
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.6e-36 157.1 201 46.8
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.7e-35 153.7 126 57.1
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.7e-35 153.7 194 47.4
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 3.8e-35 152.5 133 52.6
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 5.0e-35 152.1 147 51.0
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 7.2e-34 148.3 180 47.8
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.2e-33 147.5 126 54.8
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 1.8e-32 143.7 115 60.0
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.2e-31 141.0 101 66.3
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 8.3e-30 134.8 198 46.5
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 7.0e-29 131.7 178 49.4
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 5.9e-28 128.6 164 46.3
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.7e-27 127.1 230 41.7
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 1.1e-26 124.4 117 48.7
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 2.8e-25 119.8 159 45.9
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 6.1e-25 118.6 178 39.3
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.4e-24 117.5 173 42.2
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 5.2e-24 115.5 117 52.1
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 1.7e-22 110.5 272 35.7
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.1e-21 107.8 199 37.2
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.0e-19 101.3 114 50.0
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 3.9e-19 99.4 73 67.1
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 2.1e-17 93.6 113 44.2
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 3.5e-12 76.3 127 34.6
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 7.8e-12 75.1 56 67.9
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 3.0e-11 73.2 109 37.6
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.2e-07 61.2 119 34.5
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 3.4e-07 59.7 125 36.8
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 4.4e-07 59.3 123 35.0
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 5.8e-07 58.9 123 35.8


User provided reference genes

Program Settings