Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011772 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 6.9e-72 273.9 138 100.0
CSS0014074 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 6.9e-72 273.9 138 100.0
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 1.6e-20 103.2 69 79.7
Prupe.6G001300 Prunus persica HOM05D002872 ORTHO05D003204 8.9e-19 97.4 131 48.1
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 1.5e-18 96.7 65 80.0
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 2.6e-18 95.9 69 73.9
Duzib168G2058 Durio zibethinus HOM05D002872 ORTHO05D003204 3.4e-18 95.5 69 76.8
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 3.4e-18 95.5 71 71.8
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 3.4e-18 95.5 71 71.8
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 4.4e-18 95.1 65 75.4
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 7.5e-18 94.4 94 58.5
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 7.5e-18 94.4 69 72.5
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 9.8e-18 94.0 69 73.9
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 1.3e-17 93.6 69 71.0
CARHR233960 Cardamine hirsuta HOM05D002872 ORTHO05D003204 1.7e-17 93.2 98 57.1
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 2.2e-17 92.8 69 71.0
CANSAT11G1709 Cannabis sativa HOM05D002872 ORTHO05D003204 3.7e-17 92.0 71 69.0
AUR62042622 Chenopodium quinoa HOM05D002872 ORTHO05D003204 3.7e-17 92.0 100 55.0
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 3.7e-17 92.0 69 68.1
Gohir.D13G214900 Gossypium hirsutum HOM05D002872 ORTHO05D003204 3.7e-17 92.0 65 78.5
Gorai.013G245200 Gossypium raimondii HOM05D002872 ORTHO05D003204 3.7e-17 92.0 65 78.5
AUR62040893 Chenopodium quinoa HOM05D002872 ORTHO05D003204 4.9e-17 91.7 95 55.8
CsaV3_1G041510 Cucumis sativus L. HOM05D002872 ORTHO05D003204 4.9e-17 91.7 69 68.1
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 4.9e-17 91.7 69 68.1
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 6.4e-17 91.3 69 69.6
Haze_22912 Corylus avellana HOM05D002872 ORTHO05D003204 8.3e-17 90.9 68 70.6
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 8.3e-17 90.9 69 71.0
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 8.3e-17 90.9 69 69.6
THA.LOC104811711 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 8.3e-17 90.9 65 72.3
Gohir.A13G211000 Gossypium hirsutum HOM05D002872 ORTHO05D003204 1.4e-16 90.1 65 76.9
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 1.4e-16 90.1 81 61.7
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 1.9e-16 89.7 98 56.1
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.9e-16 89.7 69 69.6
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 2.4e-16 89.4 98 55.1
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 2.4e-16 89.4 65 72.3
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 2.4e-16 89.4 67 68.7
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 2.4e-16 89.4 67 68.7
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 2.4e-16 89.4 69 66.7
MSTRG.12807 Avicennia marina HOM05D002872 ORTHO05D003204 3.2e-16 89.0 79 62.0
C07p54870 Brassica napus HOM05D002872 ORTHO05D003204 3.2e-16 89.0 98 56.1
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 3.2e-16 89.0 125 48.0
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 5.4e-16 88.2 65 72.3
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 5.4e-16 88.2 65 73.8
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 5.4e-16 88.2 65 73.8
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 7.0e-16 87.8 98 55.1
MD11G1001100 Malus domestica HOM05D002872 ORTHO05D003204 9.2e-16 87.4 98 56.1
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 1.2e-15 87.0 98 53.1
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 1.2e-15 87.0 98 55.1
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 1.2e-15 87.0 98 55.1
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 1.2e-15 87.0 98 55.1
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 1.2e-15 87.0 104 53.8
BraA03t14737Z Brassica rapa HOM05D002872 ORTHO05D003204 1.2e-15 87.0 98 55.1
Sc16g0012250 Simmondsia chinensis HOM05D002872 ORTHO05D003204 1.2e-15 87.0 69 68.1
Cpa.g.sc119.19 Carica papaya HOM05D002872 ORTHO05D003204 2.0e-15 86.3 68 66.2
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 2.0e-15 86.3 69 66.7
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 2.0e-15 86.3 65 69.2
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 2.0e-15 86.3 96 53.1
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 3.5e-15 85.5 98 54.1
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 3.5e-15 85.5 98 54.1
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 4.6e-15 85.1 71 64.8
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 7.8e-15 84.3 98 53.1
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 1.0e-14 84.0 69 63.8
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 1.3e-14 83.6 69 60.9
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea HOM05D002872 ORTHO05D003204 1.3e-14 83.6 69 60.9
BcaC06g32751 Brassica carinata HOM05D002872 ORTHO05D003204 1.7e-14 83.2 98 53.1
Ca_18794_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 1.7e-14 83.2 69 62.3
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 2.3e-14 82.8 69 63.8
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 2.3e-14 82.8 69 63.8
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 3.9e-14 82.0 92 48.9
Psat7g134440 Pisum sativum HOM05D002872 ORTHO05D003204 6.6e-14 81.3 69 60.9
VMungo0251G2931 Vigna mungo HOM05D002872 ORTHO05D003204 6.6e-14 81.3 92 48.9
TPR.G34033 Trifolium pratense HOM05D002872 ORTHO05D003204 8.6e-14 80.9 69 60.9
Glyma.07G225100 Glycine max HOM05D002872 ORTHO05D003204 1.5e-13 80.1 92 48.9
Phvul.002G101500 Phaseolus vulgaris HOM05D002872 ORTHO05D003204 1.5e-13 80.1 65 63.1
SalBow3G2375 Salvia bowleyana HOM05D002872 ORTHO05D003204 1.9e-13 79.7 69 59.4
CiPaw.13G179400 Carya illinoinensis HOM05D002872 ORTHO05D003204 3.3e-13 79.0 69 63.8
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 7.3e-13 77.8 110 46.4
Lj4g0027888 Lotus japonicus HOM05D002872 ORTHO05D003204 7.3e-13 77.8 92 50.0
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 7.3e-13 77.8 71 56.3
FvH4_3g45950 Fragaria vesca HOM05D002872 ORTHO05D003204 9.5e-13 77.4 64 62.5
FAN11G0810 Fragaria x ananassa HOM05D002872 ORTHO05D003204 9.5e-13 77.4 64 62.5
FAN21G2326 Fragaria x ananassa HOM05D002872 ORTHO05D003204 9.5e-13 77.4 64 62.5
FAN16G3031 Fragaria x ananassa HOM05D002872 ORTHO05D003204 2.8e-12 75.9 64 60.9
RcHm_v2.0_Chr5g0084061 Rosa chinensis HOM05D002872 ORTHO05D003204 2.8e-12 75.9 68 55.9
QL01p007902 Quercus lobata HOM05D002872 ORTHO05D003204 3.6e-12 75.5 70 62.9
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 8.1e-12 74.3 65 60.0
CDE08G0031 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 3.1e-11 72.4 69 53.6
Lalb_Chr09g0328951 Lupinus albus HOM05D002872 ORTHO05D003204 4.0e-11 72.0 91 45.1
MELO3C015562.2 Cucumis melo HOM05D002872 ORTHO05D003204 6.8e-11 71.2 48 77.1
DCAR_001960 Daucus carota HOM05D002872 ORTHO05D003204 1.5e-10 70.1 115 43.5
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 2.0e-10 69.7 75 53.3
ATR0068G080 Amborella trichopoda HOM05D002872 ORTHO05D003204 4.4e-10 68.6 65 53.8
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 5.8e-10 68.2 65 56.9
HanXRQChr02g0057611 Helianthus annuus HOM05D002872 ORTHO05D003204 1.1e-08 63.9 75 50.7
SEGI_35371 Sequoiadendron giganteum HOM05D002872 ORTHO05D003204 1.4e-08 63.5 89 46.1
Ciclev10029731m.g Citrus clementina HOM05D002872 ORTHO05D003204 7.1e-08 61.2 49 67.3
Nitab4.5_0000075g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.2e-07 60.5 48 66.7
Hund20608 Selenicereus undatus HOM05D002872 ORTHO05D003204 1.2e-07 60.5 55 58.2
CDE04G2393 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 1.7e-06 56.6 59 50.8
TAR375G1003 Trochodendron aralioides HOM05D002872 ORTHO05D003204 3.9e-06 55.5 75 42.7
AagrBONN_evm.TU.Sc2ySwM_362.2790 Anthoceros agrestis HOM05D002872 ORTHO05D003204 8.6e-06 54.3 96 40.6
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 8.6e-06 54.3 98 41.8


User provided reference genes

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