Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.6e-234 813.5 434 100.0
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.2e-224 781.6 434 97.5
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.8e-190 667.5 432 81.9
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 2.9e-185 652.1 433 80.1
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 5.2e-182 641.3 448 77.2
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 2.6e-181 639.0 433 78.3
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 2.6e-181 639.0 433 78.5
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 4.9e-180 634.8 429 79.5
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 7.8e-178 627.5 430 76.5
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 6.6e-177 624.4 429 77.2
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 8.6e-177 624.0 429 77.9
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.0e-174 617.1 429 76.2
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 8.9e-174 614.0 428 75.5
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.0e-173 612.8 431 74.9
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 4.4e-173 611.7 430 75.3
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.9e-172 609.0 428 75.2
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 3.7e-172 608.6 472 72.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 8.3e-172 607.4 431 73.5
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 3.5e-170 602.1 429 75.8
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 6.0e-170 601.3 427 75.4
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 3.0e-169 599.0 416 75.5
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 5.0e-169 598.2 432 73.6
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 5.0e-169 598.2 433 73.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.2e-167 593.6 429 73.0
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.8e-167 592.4 433 72.1
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.1e-166 590.5 432 74.1
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.1e-166 590.5 431 74.2
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 2.0e-165 586.3 429 72.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.4e-164 581.3 464 69.2
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.1e-163 580.5 427 75.6
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 4.1e-163 578.6 429 72.3
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.7e-161 573.2 430 72.1
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 3.0e-161 572.4 430 71.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 6.6e-161 571.2 437 70.9
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.6e-161 571.2 429 70.6
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.6e-161 571.2 430 71.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 8.6e-161 570.9 429 69.9
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.1e-160 570.5 429 72.7
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.5e-160 570.1 429 70.6
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 5.6e-160 568.2 429 70.4
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.8e-159 565.8 428 70.1
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 3.6e-159 565.5 429 71.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.6e-159 565.5 434 72.1
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 8.1e-159 564.3 430 70.9
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 1.1e-158 563.9 431 69.8
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.1e-158 563.9 430 69.5
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.1e-158 562.4 373 79.6
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 4.0e-158 562.0 430 70.2
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 5.2e-158 561.6 430 69.3
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 3.4e-157 558.9 430 68.8
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 4.4e-157 558.5 431 70.3
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 9.9e-157 557.4 411 72.3
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.9e-156 555.8 433 70.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 4.9e-156 555.1 431 70.1
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 8.3e-156 554.3 430 68.6
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 1.1e-155 553.9 431 70.1
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 2.4e-155 552.7 431 69.6
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 3.2e-155 552.4 432 69.7
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 7.1e-155 551.2 430 70.2
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 9.2e-155 550.8 430 70.0
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.2e-154 550.4 429 69.7
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.1e-154 549.7 430 69.3
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.7e-154 549.3 435 68.0
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 4.6e-154 548.5 429 68.3
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 7.8e-154 547.7 436 68.3
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.0e-153 547.4 408 71.3
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.3e-153 547.0 413 69.5
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.0e-153 545.8 514 61.7
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.9e-153 545.4 430 68.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 6.6e-153 544.7 434 70.0
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 6.6e-153 544.7 434 68.7
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 6.6e-153 544.7 429 68.5
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 6.6e-153 544.7 429 68.5
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 8.6e-153 544.3 434 68.7
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.1e-152 543.9 429 68.3
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.9e-152 543.1 415 69.6
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 2.5e-152 542.7 433 68.4
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.5e-152 542.7 433 67.7
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 4.3e-152 542.0 436 67.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 4.3e-152 542.0 429 68.5
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.6e-151 540.0 434 68.4
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.8e-151 539.3 434 68.4
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.8e-151 539.3 430 68.8
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.8e-151 539.3 426 67.4
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 5.2e-150 535.0 435 67.1
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 2.0e-149 533.1 429 66.9
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-149 532.7 436 66.5
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.6e-149 532.7 419 71.6
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 4.4e-149 531.9 434 67.1
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 2.9e-148 529.3 433 67.7
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.8e-148 528.9 432 67.6
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 6.4e-148 528.1 430 64.9
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 3.2e-147 525.8 435 65.7
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.4e-147 525.0 429 66.2
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.1e-147 524.6 415 67.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.2e-146 523.9 512 61.1
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 3.5e-146 522.3 434 65.4
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 4.6e-146 521.9 435 65.7
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.8e-146 521.2 433 66.5
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.0e-145 520.8 435 66.2
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.7e-145 520.0 433 66.5
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 2.3e-145 519.6 428 66.6
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 5.1e-145 518.5 428 67.3
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 8.7e-145 517.7 435 64.6
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 8.7e-145 517.7 368 72.6
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 6.2e-143 511.5 436 63.5
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-142 510.8 433 68.8
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.8e-142 510.0 414 65.9
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 6.9e-142 508.1 413 68.3
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-141 506.1 415 65.5
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.6e-138 495.4 435 63.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.9e-137 492.3 436 64.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.3e-136 488.8 409 64.5
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.6e-135 485.7 430 61.6
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.8e-134 483.4 436 61.5
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 4.5e-133 478.8 313 81.2
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 8.4e-132 474.6 431 60.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.3e-129 467.2 386 65.3
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.4e-126 457.2 437 61.1
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.8e-126 456.8 429 60.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 9.0e-126 454.5 428 59.8
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.1e-115 421.0 380 65.8
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.9e-109 398.7 429 55.2
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 5.0e-108 395.6 295 70.5
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 8.5e-108 394.8 433 54.3
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 6.1e-106 388.7 344 61.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.0e-105 387.9 300 70.7
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.2e-100 370.2 410 49.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 4.8e-95 352.4 410 48.0
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 2.0e-93 347.1 287 65.2
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.5e-85 319.7 182 87.4
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.2e-80 304.7 205 80.5
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.8e-79 300.1 248 65.3
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.2e-77 294.7 322 54.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.9e-77 292.4 419 45.6
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.2e-65 252.7 179 76.0
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.2e-61 241.5 188 67.0
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.0e-60 238.4 178 68.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.6e-60 235.3 160 80.0
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 5.2e-57 226.1 172 68.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-51 208.4 147 78.9
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 7.8e-45 185.7 139 62.6
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 6.2e-42 176.0 242 47.9
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 6.0e-37 159.5 120 71.7
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 1.4e-30 138.3 112 69.6
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 3.3e-27 127.1 93 73.1
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.8e-25 121.3 98 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.9e-22 111.3 113 50.4
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.6e-21 106.7 80 67.5
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.7e-20 102.4 123 52.8
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.6e-18 98.2 326 29.8
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.7e-13 80.9 376 26.1
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.7e-10 70.5 399 24.1
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 3.4e-08 63.9 195 31.8
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.3e-07 62.0 53 62.3
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.9e-07 60.1 194 29.4
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 6.5e-07 59.7 39 71.8
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-06 58.5 198 29.8
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.5e-06 57.8 195 29.2


User provided reference genes

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