Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.7e-118 429.5 242 100.0
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 7.6e-98 360.9 249 81.5
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.9e-40 170.2 142 74.6
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 2.5e-40 169.9 145 67.6
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.5e-40 168.7 143 67.8
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 4.7e-39 165.6 141 73.8
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.8e-38 163.7 154 65.6
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 4.0e-30 136.0 116 67.2
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.0e-29 133.7 119 65.5
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 4.4e-29 132.5 116 70.7
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.7e-28 130.6 133 60.9
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 2.8e-28 129.8 144 55.6
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.8e-27 127.1 132 55.3
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 3.1e-27 126.3 147 61.9
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 7.0e-27 125.2 130 57.7
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 1.2e-26 124.4 135 63.0
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.6e-26 124.0 130 63.8
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.7e-26 123.2 137 56.9
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 4.5e-26 122.5 136 55.9
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 5.9e-26 122.1 122 57.4
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 1.3e-25 120.9 133 57.9
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.2e-25 120.2 131 55.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 3.8e-25 119.4 139 54.7
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 8.5e-25 118.2 146 52.1
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 8.5e-25 118.2 133 51.1
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.1e-24 117.9 133 54.1
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.1e-24 117.9 133 54.1
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 1.9e-24 117.1 130 55.4
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.9e-24 117.1 136 58.8
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.5e-24 116.7 130 54.6
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 2.5e-24 116.7 141 53.2
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.5e-24 116.7 134 53.7
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 3.2e-24 116.3 138 52.9
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 3.2e-24 116.3 138 52.9
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 2.7e-23 113.2 124 52.4
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 2.7e-23 113.2 138 53.6
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 3.6e-23 112.8 134 51.5
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 3.6e-23 112.8 139 51.8
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 3.6e-23 112.8 140 50.7
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 4.7e-23 112.5 138 51.4
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 4.7e-23 112.5 138 51.4
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 6.1e-23 112.1 89 65.2
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 6.1e-23 112.1 137 51.1
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 6.1e-23 112.1 137 53.3
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 6.1e-23 112.1 137 57.7
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 6.1e-23 112.1 139 50.4
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.8e-22 110.5 134 50.7
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 4.0e-22 109.4 153 45.8
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 8.8e-22 108.2 142 48.6
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.2e-21 107.8 127 56.7
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.2e-21 107.8 145 50.3
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 2.6e-21 106.7 139 50.4
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 3.4e-21 106.3 131 56.5
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 3.4e-21 106.3 142 50.0
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 3.4e-21 106.3 139 47.5
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 7.5e-21 105.1 137 49.6
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 9.8e-21 104.8 139 47.5
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 9.8e-21 104.8 141 49.6
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 1.7e-20 104.0 138 50.7
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.7e-20 104.0 134 47.0
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 2.8e-20 103.2 139 53.2
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 3.7e-20 102.8 139 48.2
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 3.7e-20 102.8 137 49.6
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.8e-20 102.4 126 48.4
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 4.8e-20 102.4 137 51.1
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 2.4e-19 100.1 163 42.9
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 7.0e-19 98.6 94 58.5
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 7.0e-19 98.6 137 49.6
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 7.0e-19 98.6 137 51.1
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 3.5e-18 96.3 137 47.4
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 4.5e-18 95.9 147 45.6
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 5.9e-18 95.5 128 46.1
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.9e-18 95.5 129 50.4
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.0e-17 94.7 127 43.3
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 3.8e-17 92.8 140 50.0
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 3.8e-17 92.8 107 61.7
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 5.0e-17 92.4 106 53.8
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 3.2e-16 89.7 136 52.9
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 4.2e-16 89.4 116 54.3
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 5.5e-16 89.0 103 53.4
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 5.5e-16 89.0 134 45.5
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 9.4e-16 88.2 158 48.7
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.2e-15 87.8 140 52.1
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 2.1e-15 87.0 86 55.8
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 2.1e-15 87.0 86 54.7
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 2.7e-15 86.7 113 54.0
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.6e-15 86.3 108 50.0
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.7e-15 85.9 139 51.1
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 6.1e-15 85.5 134 45.5
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.4e-14 84.3 134 46.3
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 2.3e-14 83.6 91 51.6
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 2.3e-14 83.6 91 51.6
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 4.0e-14 82.8 138 50.7
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.2e-13 81.3 86 52.3
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.5e-13 80.9 95 52.6
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 2.0e-13 80.5 128 41.4
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 2.0e-13 80.5 76 55.3
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.4e-13 79.7 163 42.9
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 4.4e-13 79.3 78 56.4
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 5.7e-13 79.0 86 51.2
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 7.5e-13 78.6 89 52.8
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.2e-12 77.0 106 48.1
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 3.7e-12 76.3 133 48.9
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 4.9e-12 75.9 107 48.6
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 6.3e-12 75.5 154 42.2
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 6.3e-12 75.5 123 51.2
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 8.3e-12 75.1 122 49.2
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 8.3e-12 75.1 154 38.3
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-11 74.7 115 48.7
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 1.1e-11 74.7 84 50.0
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 1.4e-11 74.3 129 41.1
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 9.2e-11 71.6 140 42.1
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.6e-10 70.9 148 41.9
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 2.0e-10 70.5 102 49.0
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 3.5e-10 69.7 59 61.0
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 3.5e-10 69.7 80 53.8
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 4.5e-10 69.3 161 39.1
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 5.9e-10 68.9 124 36.3
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 7.7e-10 68.6 89 49.4
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 2.3e-09 67.0 105 42.9
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 2.3e-09 67.0 77 53.2
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 2.3e-09 67.0 152 41.4
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 2.9e-09 66.6 69 52.2
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 5.0e-09 65.9 59 59.3
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 8.6e-09 65.1 59 57.6
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 1.9e-08 63.9 87 46.0
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 1.9e-08 63.9 89 46.1
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 7.3e-08 62.0 69 47.8
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 9.5e-08 61.6 76 47.4
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 3.6e-07 59.7 86 47.7
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 4.7e-07 59.3 112 34.8
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 1.8e-06 57.4 87 56.3
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 1.8e-06 57.4 116 38.8


User provided reference genes

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