Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013997 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 2.1e-225 785.4 408 100.0
Actinidia16351 Actinidia chinensis HOM05D003775 ORTHO05D004314 2.1e-148 529.6 391 70.6
Dinv36216 Davidia involucrata HOM05D003775 ORTHO05D004314 1.8e-139 500.0 380 71.1
Hma1.2p1_1694F.1_g298010 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 6.1e-116 421.8 378 62.7
Hma1.2p1_1200F.1_g266540 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 1.4e-112 410.6 374 61.5
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 4.5e-111 405.6 312 68.3
Lsat_1_v5_gn_6_26100 Lactuca sativa HOM05D003775 ORTHO05D004314 1.7e-105 387.1 377 56.8
Migut.N02350 Erythranthe guttata HOM05D003775 ORTHO05D004314 1.8e-104 383.6 388 56.4
SalBow6G0244 Salvia bowleyana HOM05D003775 ORTHO05D004314 2.1e-100 370.2 375 56.5
Oeu061301.1 Olea europaea HOM05D003775 ORTHO05D004314 1.0e-99 367.9 385 55.3
TAR633G1887 Trochodendron aralioides HOM05D003775 ORTHO05D004314 7.5e-98 361.7 404 54.7
MSTRG.12454 Avicennia marina HOM05D003775 ORTHO05D004314 1.4e-96 357.5 383 54.3
Solyc11g065210.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 1.8e-96 357.1 381 53.3
PGSC0003DMG400013186 Solanum tuberosum HOM05D003775 ORTHO05D004314 1.8e-96 357.1 388 54.1
Sopen11g024920 Solanum pennellii HOM05D003775 ORTHO05D004314 3.1e-96 356.3 381 53.3
Dinv22154 Davidia involucrata HOM05D003775 ORTHO05D004314 4.1e-96 355.9 247 75.7
Nitab4.5_0002726g0070 Nicotiana tabacum HOM05D003775 ORTHO05D004314 2.9e-94 349.7 376 54.0
TAR636G2085 Trochodendron aralioides HOM05D003775 ORTHO05D004314 1.1e-93 347.8 406 51.7
Nitab4.5_0006878g0040 Nicotiana tabacum HOM05D003775 ORTHO05D004314 9.4e-93 344.7 381 54.1
HanXRQChr13g0401471 Helianthus annuus HOM05D003775 ORTHO05D004314 2.1e-92 343.6 378 55.0
vmacro04121 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 2.7e-92 343.2 281 65.5
Aqoxy6G01356 Aquilegia oxysepala HOM05D003775 ORTHO05D004314 1.0e-91 341.3 387 52.7
CAN.G633.2 Capsicum annuum HOM05D003775 ORTHO05D004314 1.0e-91 341.3 380 51.8
Nn3g16658 Nelumbo nucifera HOM05D003775 ORTHO05D004314 1.0e-91 341.3 397 52.4
SGA_v2.0_scaffold42G16081 Striga asiatica HOM05D003775 ORTHO05D004314 5.2e-91 339.0 383 51.7
Nn2g15064 Nelumbo nucifera HOM05D003775 ORTHO05D004314 1.5e-90 337.4 392 52.8
GSVIVG01000859001 Vitis vinifera HOM05D003775 ORTHO05D004314 1.5e-90 337.4 393 52.7
Peaxi162Scf00004g03811 Petunia axillaris HOM05D003775 ORTHO05D004314 1.2e-87 327.8 385 51.4
MBI16_g10269_MAGBIO Magnolia biondii HOM05D003775 ORTHO05D004314 3.5e-87 326.2 403 50.4
Potri.003G202800 Populus trichocarpa HOM05D003775 ORTHO05D004314 1.5e-85 320.9 390 52.1
CSS0036530 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 1.2e-84 317.8 399 50.6
CSS0045062 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 1.2e-84 317.8 399 50.6
PSO339G4517 Papaver somniferum HOM05D003775 ORTHO05D004314 8.0e-84 315.1 413 48.4
Hund18010 Selenicereus undatus HOM05D003775 ORTHO05D004314 1.0e-83 314.7 385 48.8
Atru.chr11.2505 Acer truncatum HOM05D003775 ORTHO05D004314 2.3e-83 313.5 422 46.9
TWI15G0411 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 2.6e-82 310.1 391 49.6
MD07G1027400 Malus domestica HOM05D003775 ORTHO05D004314 3.4e-82 309.7 393 49.4
Sabra03G0149800 Salix brachista HOM05D003775 ORTHO05D004314 4.4e-82 309.3 394 50.3
PSO384G3184 Papaver somniferum HOM05D003775 ORTHO05D004314 5.7e-82 308.9 405 46.9
RcHm_v2.0_Chr1g0319451 Rosa chinensis HOM05D003775 ORTHO05D004314 5.7e-82 308.9 398 48.0
Dinv32058 Davidia involucrata HOM05D003775 ORTHO05D004314 9.8e-82 308.1 393 49.6
Manes.04G163700 Manihot esculenta HOM05D003775 ORTHO05D004314 1.3e-81 307.8 390 48.2
Haze_03108 Corylus avellana HOM05D003775 ORTHO05D004314 1.7e-81 307.4 412 47.6
CiPaw.14G005400 Carya illinoinensis HOM05D003775 ORTHO05D004314 2.2e-81 307.0 387 48.3
COL.COLO4_25844 Corchorus olitorius HOM05D003775 ORTHO05D004314 2.2e-81 307.0 392 49.0
MD02G1296700 Malus domestica HOM05D003775 ORTHO05D004314 2.8e-81 306.6 393 47.8
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 3.7e-81 306.2 398 47.7
FvH4_7g02050 Fragaria vesca HOM05D003775 ORTHO05D004314 6.3e-81 305.4 398 47.7
Manes.11G002300 Manihot esculenta HOM05D003775 ORTHO05D004314 8.3e-81 305.1 388 47.9
Gohir.D06G164900 Gossypium hirsutum HOM05D003775 ORTHO05D004314 1.1e-80 304.7 392 46.9
Oeu061300.1 Olea europaea HOM05D003775 ORTHO05D004314 1.8e-80 303.9 261 62.5
Prupe.2G027700 Prunus persica HOM05D003775 ORTHO05D004314 2.4e-80 303.5 395 49.1
Gorai.010G192300 Gossypium raimondii HOM05D003775 ORTHO05D004314 4.1e-80 302.8 392 46.9
FAN01G0886 Fragaria x ananassa HOM05D003775 ORTHO05D004314 5.4e-80 302.4 398 47.5
Cfa010842 Carpinus fangiana HOM05D003775 ORTHO05D004314 1.2e-79 301.2 415 46.0
Gohir.A06G159000 Gossypium hirsutum HOM05D003775 ORTHO05D004314 1.6e-79 300.8 395 46.8
Ciclev10031129m.g Citrus clementina HOM05D003775 ORTHO05D004314 5.9e-79 298.9 408 48.0
Cc01_g06210 Coffea canephora HOM05D003775 ORTHO05D004314 1.7e-78 297.4 288 57.6
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 2.3e-78 297.0 387 48.6
Ca_00245_v3 Cicer arietinum L. HOM05D003775 ORTHO05D004314 3.9e-78 296.2 397 48.4
Rhsim07G0061800 Rhododendron simsii HOM05D003775 ORTHO05D004314 1.1e-77 294.7 413 47.0
Glyma.09G225200 Glycine max HOM05D003775 ORTHO05D004314 1.5e-77 294.3 395 46.6
Sabra01G0017100 Salix brachista HOM05D003775 ORTHO05D004314 1.5e-77 294.3 384 48.2
Sc14g0005810 Simmondsia chinensis HOM05D003775 ORTHO05D004314 1.5e-77 294.3 392 47.7
Actinidia06274 Actinidia chinensis HOM05D003775 ORTHO05D004314 2.5e-77 293.5 390 46.4
HPP92_025001 Vanilla planifolia HOM05D003775 ORTHO05D004314 4.3e-77 292.7 393 45.5
FAN10G1046 Fragaria x ananassa HOM05D003775 ORTHO05D004314 7.3e-77 292.0 398 46.7
Lalb_Chr19g0140171 Lupinus albus HOM05D003775 ORTHO05D004314 3.6e-76 289.7 385 47.5
Cpa.g.sc197.14 Carica papaya HOM05D003775 ORTHO05D004314 6.1e-76 288.9 392 47.7
Duzib114G0793 Durio zibethinus HOM05D003775 ORTHO05D004314 6.1e-76 288.9 391 47.3
Thecc.10G005200 Theobroma cacao HOM05D003775 ORTHO05D004314 6.1e-76 288.9 393 46.6
AUR62014380 Chenopodium quinoa HOM05D003775 ORTHO05D004314 8.0e-76 288.5 386 45.9
AUR62019122 Chenopodium quinoa HOM05D003775 ORTHO05D004314 1.8e-75 287.3 391 44.8
Eucgr.G03263 Eucalyptus grandis HOM05D003775 ORTHO05D004314 1.8e-75 287.3 390 46.4
Psat7g201120 Pisum sativum HOM05D003775 ORTHO05D004314 2.3e-75 287.0 397 46.6
arahy.Tifrunner.gnm1.ann1.F7MMZ3 Arachis hypogaea HOM05D003775 ORTHO05D004314 5.2e-75 285.8 404 45.8
Medtr2g060050 Medicago truncatula HOM05D003775 ORTHO05D004314 1.2e-74 284.6 398 47.7
Lj7C578T6 Lonicera japonica HOM05D003775 ORTHO05D004314 1.5e-74 284.3 404 46.5
TWI63G1774 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 1.5e-74 284.3 403 44.9
arahy.Tifrunner.gnm1.ann1.IE4AJN Arachis hypogaea HOM05D003775 ORTHO05D004314 2.0e-74 283.9 417 45.1
Lj3g0020763 Lotus japonicus HOM05D003775 ORTHO05D004314 3.4e-74 283.1 399 47.6
QL04p013175 Quercus lobata HOM05D003775 ORTHO05D004314 4.4e-74 282.7 394 47.5
THA.LOC104826715 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 4.4e-74 282.7 399 45.4
Ah.05g171640 Amaranthus hybridus HOM05D003775 ORTHO05D004314 5.8e-74 282.3 384 47.9
Phvul.011G014600 Phaseolus vulgaris HOM05D003775 ORTHO05D004314 1.3e-73 281.2 382 46.9
EL10Ac1g00474 Beta vulgaris HOM05D003775 ORTHO05D004314 4.9e-73 279.3 395 43.3
Lsat_1_v5_gn_1_98220 Lactuca sativa HOM05D003775 ORTHO05D004314 4.9e-73 279.3 383 47.0
DCAR_002120 Daucus carota HOM05D003775 ORTHO05D004314 6.4e-73 278.9 390 47.7
THA.LOC104819115 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 1.1e-72 278.1 396 44.2
AT4G30890 Arabidopsis thaliana HOM05D003775 ORTHO05D004314 3.2e-72 276.6 408 44.1
VMungo1127G0258 Vigna mungo HOM05D003775 ORTHO05D004314 3.2e-72 276.6 386 45.6
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 4.1e-72 276.2 395 43.0
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 5.4e-72 275.8 396 45.7
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 1.2e-71 274.6 395 43.0
ATR0721G058 Amborella trichopoda HOM05D003775 ORTHO05D004314 3.5e-71 273.1 201 68.2
AL7G21200 Arabidopsis lyrata HOM05D003775 ORTHO05D004314 3.5e-71 273.1 400 44.5
Actinidia06930 Actinidia chinensis HOM05D003775 ORTHO05D004314 1.0e-70 271.6 177 75.7
TPR.G20248 Trifolium pratense HOM05D003775 ORTHO05D004314 1.3e-70 271.2 393 44.3
CDE09G1021 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 3.0e-70 270.0 418 43.8
PGR031G2286 Punica granatum HOM05D003775 ORTHO05D004314 6.6e-70 268.9 390 44.6
HanXRQChr01g0020841 Helianthus annuus HOM05D003775 ORTHO05D004314 1.1e-69 268.1 392 46.4
Aa31LG2G19490 Aethionema arabicum HOM05D003775 ORTHO05D004314 1.5e-69 267.7 415 41.0
Sp7g28760 Schrenkiella parvula HOM05D003775 ORTHO05D004314 1.9e-69 267.3 418 43.3
CsaV3_5G006240 Cucumis sativus L. HOM05D003775 ORTHO05D004314 5.6e-69 265.8 412 40.8
DCAR_031617 Daucus carota HOM05D003775 ORTHO05D004314 5.6e-69 265.8 371 47.4
CANSAT80G1378 Cannabis sativa HOM05D003775 ORTHO05D004314 1.6e-68 264.2 387 45.0
Migut.N01820 Erythranthe guttata HOM05D003775 ORTHO05D004314 2.8e-68 263.5 391 46.0
Migut.O00905 Erythranthe guttata HOM05D003775 ORTHO05D004314 2.8e-68 263.5 383 46.0
C07p58270 Brassica napus HOM05D003775 ORTHO05D004314 6.2e-68 262.3 387 43.2
CDE02G2263 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 1.1e-67 261.5 240 60.4
MELO3C011731.2 Cucumis melo HOM05D003775 ORTHO05D004314 2.3e-67 260.4 397 41.6
ClCG02G013920 Citrullus lanatus HOM05D003775 ORTHO05D004314 3.1e-67 260.0 395 41.8
Cc02_g29350 Coffea canephora HOM05D003775 ORTHO05D004314 3.1e-67 260.0 382 43.5
Sed0002392 Sechium edule HOM05D003775 ORTHO05D004314 5.2e-67 259.2 385 42.6
BolC7t46285H Brassica oleracea HOM05D003775 ORTHO05D004314 8.9e-67 258.5 383 43.3
Sc10g0004200 Simmondsia chinensis HOM05D003775 ORTHO05D004314 8.9e-67 258.5 387 44.2
BcaB03g12665 Brassica carinata HOM05D003775 ORTHO05D004314 1.5e-66 257.7 405 42.0
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 1.5e-66 257.7 394 42.9
Carub.0007s0965 Capsella rubella HOM05D003775 ORTHO05D004314 1.3e-65 254.6 400 42.0
BcaNung02733 Brassica carinata HOM05D003775 ORTHO05D004314 8.3e-65 251.9 242 55.0
BcaNung03431 Brassica carinata HOM05D003775 ORTHO05D004314 1.4e-64 251.1 422 39.6
BcaC01g01133 Brassica carinata HOM05D003775 ORTHO05D004314 1.9e-64 250.8 439 40.8
BcaC09g51876 Brassica carinata HOM05D003775 ORTHO05D004314 5.4e-64 249.2 420 40.0
BraA01t00678Z Brassica rapa HOM05D003775 ORTHO05D004314 5.4e-64 249.2 234 55.1
Nitab4.5_0000316g0220 Nicotiana tabacum HOM05D003775 ORTHO05D004314 5.4e-64 249.2 395 43.3
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 5.4e-64 249.2 410 42.9
BraA08t33864Z Brassica rapa HOM05D003775 ORTHO05D004314 9.2e-64 248.4 435 40.9
SGA_v2.0_scaffold354G49741 Striga asiatica HOM05D003775 ORTHO05D004314 2.7e-63 246.9 406 41.9
Zm00001eb329890 Zea mays HOM05D003775 ORTHO05D004314 7.8e-63 245.4 397 41.8
Sed0004278 Sechium edule HOM05D003775 ORTHO05D004314 1.0e-62 245.0 395 41.5
A01p07290 Brassica napus HOM05D003775 ORTHO05D004314 2.3e-62 243.8 414 40.8
CARHR238790 Cardamine hirsuta HOM05D003775 ORTHO05D004314 2.3e-62 243.8 408 40.2
A08p19030 Brassica napus HOM05D003775 ORTHO05D004314 3.0e-62 243.4 299 49.8
BolC3t21154H Brassica oleracea HOM05D003775 ORTHO05D004314 3.0e-62 243.4 435 40.7
Thhalv10025311m.g Eutrema salsugineum HOM05D003775 ORTHO05D004314 6.6e-62 242.3 219 58.4
Nitab4.5_0001543g0030 Nicotiana tabacum HOM05D003775 ORTHO05D004314 8.6e-62 241.9 381 42.5
C03p88460 Brassica napus HOM05D003775 ORTHO05D004314 3.3e-61 240.0 299 49.5
SalBow6G4543 Salvia bowleyana HOM05D003775 ORTHO05D004314 4.3e-61 239.6 213 59.6
Zm00001eb110870 Zea mays HOM05D003775 ORTHO05D004314 4.3e-61 239.6 396 41.2
BolC1t00794H Brassica oleracea HOM05D003775 ORTHO05D004314 5.6e-61 239.2 221 55.7
C01p08050 Brassica napus HOM05D003775 ORTHO05D004314 7.3e-61 238.8 305 45.9
Duzib106G0584 Durio zibethinus HOM05D003775 ORTHO05D004314 2.8e-60 236.9 184 68.5
Lj1A317T44 Lonicera japonica HOM05D003775 ORTHO05D004314 4.0e-59 233.0 282 51.8
Psat7g109680 Pisum sativum HOM05D003775 ORTHO05D004314 2.0e-58 230.7 183 66.7
unitig_22.g6197 Utricularia gibba HOM05D003775 ORTHO05D004314 1.2e-55 221.5 353 40.2
unitig_0.g1004 Utricularia gibba HOM05D001495 ORTHO05D004314 4.6e-55 219.5 383 39.2
Os07g0661300 Oryza sativa ssp. japonica HOM05D003775 ORTHO05D004314 4.3e-53 213.0 204 56.9
SEGI_11797 Sequoiadendron giganteum HOM05D003775 ORTHO05D004314 7.3e-53 212.2 331 41.4
vmacro13720 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 5.2e-51 206.1 393 40.7
Mapoly0004s0306 Marchantia polymorpha HOM05D003775 ORTHO05D004314 2.0e-50 204.1 215 50.2
Lsat_1_v5_gn_4_28840 Lactuca sativa HOM05D003775 ORTHO05D004314 1.1e-48 198.4 131 73.3
Pp3c16_4180 Physcomitrium patens HOM05D003775 ORTHO05D004314 1.3e-44 184.9 214 48.6
CBR_g66808 Chara braunii HOM05D003775 ORTHO05D004314 2.7e-39 167.2 239 42.3
HanXRQChr02g0051501 Helianthus annuus HOM05D003775 ORTHO05D004314 4.6e-39 166.4 381 35.7
Lalb_Chr01g0000601 Lupinus albus HOM05D003775 ORTHO05D004314 7.3e-37 159.1 128 63.3
Lj1A317T43 Lonicera japonica HOM05D003775 ORTHO05D004314 1.1e-35 155.2 93 81.7
ECA233G1032 Erigeron canadensis HOM05D003775 ORTHO05D004314 1.5e-34 151.4 112 69.6
AagrBONN_evm.TU.Sc2ySwM_344.2031 Anthoceros agrestis HOM05D003775 ORTHO05D004314 2.0e-34 151.0 219 44.7
MD02G1296600 Malus domestica HOM05D003775 ORTHO05D004314 3.8e-33 146.7 355 36.1
A03p60400 Brassica napus HOM05D003775 ORTHO05D004314 1.2e-31 141.7 353 34.6
ECA233G2787 Erigeron canadensis HOM05D003775 ORTHO05D004314 8.7e-22 109.0 192 39.6
Cfa024126 Carpinus fangiana HOM05D003775 ORTHO05D004314 2.9e-17 94.0 203 30.5
Lalb_Chr01g0000591 Lupinus albus HOM05D003775 ORTHO05D004314 6.5e-17 92.8 237 34.2
PSO447G0106 Papaver somniferum HOM05D003775 ORTHO05D004314 3.5e-15 87.0 128 40.6
SMO165G0072 Selaginella moellendorffii HOM05D003775 ORTHO05D004314 1.0e-14 85.5 103 49.5
SGA_v2.0_scaffold42G16084 Striga asiatica HOM05D003775 ORTHO05D004314 3.0e-14 84.0 58 69.0
BraA03t15080Z Brassica rapa HOM05D003775 ORTHO05D004314 3.9e-14 83.6 61 65.6
PGSC0003DMG400012744 Solanum tuberosum HOM05D003775 ORTHO05D004314 1.5e-10 71.6 77 48.1
Dinv39690 Davidia involucrata HOM05D003775 ORTHO05D004314 1.6e-07 61.6 210 31.0
PGSC0003DMG400012740 Solanum tuberosum HOM05D003775 ORTHO05D004314 6.1e-07 59.7 157 30.6
Aa31LG6G7480 Aethionema arabicum HOM05D001091 ORTHO05D001020 3.0e-06 57.4 191 28.8
TAR629G2137 Trochodendron aralioides HOM05D001091 ORTHO05D001020 3.0e-06 57.4 162 29.0
Potri.006G201100 Populus trichocarpa HOM05D001091 ORTHO05D001020 5.1e-06 56.6 157 28.7
AUR62020212 Chenopodium quinoa HOM05D001091 ORTHO05D001020 8.8e-06 55.8 204 29.4
THA.LOC104803230 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 8.8e-06 55.8 191 29.3


User provided reference genes

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