Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.7e-307 1057.0 514 100.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-302 1042.0 514 98.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.2e-233 813.1 513 76.2
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.2e-232 808.9 523 77.1
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.5e-231 804.3 513 77.0
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.5e-231 804.3 513 77.0
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.6e-230 801.6 513 76.8
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.6e-230 801.6 513 76.8
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.2e-224 782.3 517 74.3
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.3e-216 756.5 526 71.1
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.7e-216 756.1 526 70.9
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.9e-215 752.7 524 71.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.4e-213 746.5 516 70.9
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.1e-212 743.4 520 71.3
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 5.7e-212 741.1 522 70.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.8e-211 738.8 534 68.4
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 7.0e-210 734.2 529 68.6
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 7.2e-207 724.2 514 68.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.0e-205 718.8 525 69.0
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 4.0e-205 718.4 523 68.8
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 4.0e-205 718.4 530 67.4
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 4.0e-205 718.4 530 67.4
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 4.0e-205 718.4 523 68.6
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.5e-204 716.5 499 71.9
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.8e-202 709.5 510 69.8
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.8e-202 709.5 547 65.8
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.8e-202 709.5 547 65.8
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.4e-202 709.1 512 70.3
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.3e-202 708.0 511 69.7
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.6e-201 706.4 510 69.4
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.0e-201 706.1 514 67.7
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.5e-201 705.3 510 68.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.9e-201 704.5 514 67.1
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 5.9e-201 704.5 512 68.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.9e-200 702.2 528 65.7
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.9e-199 699.5 512 67.8
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.5e-199 699.1 509 67.6
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.2e-199 698.4 522 68.2
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 3.6e-198 695.3 524 65.6
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.7e-198 694.9 527 64.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 4.7e-198 694.9 512 68.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 6.8e-197 691.0 519 64.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.8e-197 690.6 510 68.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 9.8e-196 687.2 518 65.8
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.7e-195 686.4 534 64.2
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.2e-195 686.0 515 65.2
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.4e-194 683.3 510 67.1
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.8e-194 682.9 524 65.3
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.4e-194 682.6 509 67.8
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.4e-194 682.6 509 68.6
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.1e-194 682.2 518 66.0
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 4.5e-193 678.3 534 65.5
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.8e-192 675.2 522 64.8
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.8e-192 675.2 517 66.0
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 8.6e-192 674.1 521 66.4
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 3.3e-191 672.2 528 64.2
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 4.2e-191 671.8 518 64.7
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 6.1e-190 667.9 517 65.2
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.0e-189 665.2 512 66.0
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 5.2e-189 664.8 518 66.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.4e-188 662.1 518 63.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.5e-188 661.0 511 64.2
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.7e-187 659.8 524 63.9
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 4.9e-187 658.3 530 64.2
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.4e-186 656.8 518 65.1
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.4e-186 656.8 544 60.1
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.4e-186 656.8 520 64.4
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.4e-186 656.8 531 63.7
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.0e-186 654.4 518 63.1
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.0e-186 654.4 518 63.7
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.2e-185 653.7 517 61.9
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.0e-184 650.6 515 62.7
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.9e-184 649.0 519 64.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 3.3e-183 645.6 518 63.1
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-182 643.7 510 64.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.6e-182 642.1 519 62.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 8.0e-182 641.0 525 60.4
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.0e-181 640.6 545 60.9
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 5.2e-181 638.3 526 62.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 3.4e-180 635.6 519 63.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.4e-180 635.6 520 61.5
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 4.4e-180 635.2 521 61.2
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.7e-179 633.3 538 60.6
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 3.7e-179 632.1 538 60.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 7.0e-178 627.9 531 60.5
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 7.0e-178 627.9 533 61.2
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.5e-177 625.5 539 59.9
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 6.0e-177 624.8 543 59.9
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 7.8e-177 624.4 529 60.7
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.0e-176 624.0 537 61.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.3e-176 622.9 529 60.7
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 3.0e-176 622.5 529 60.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.6e-176 620.9 518 61.4
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.9e-175 619.8 520 59.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 9.5e-175 617.5 446 69.5
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.4e-173 613.6 480 61.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 4.0e-173 612.1 530 59.4
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.0e-172 609.8 518 62.5
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.6e-172 609.4 513 60.6
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 6.4e-171 604.7 404 70.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 8.3e-171 604.4 536 57.5
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.9e-170 603.2 453 64.5
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.3e-168 596.3 541 57.5
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.9e-168 595.5 474 58.6
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 8.9e-165 584.3 522 58.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.5e-164 583.6 455 63.3
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.7e-163 580.1 512 56.2
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 6.6e-160 568.2 393 69.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.2e-158 563.9 470 61.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 8.4e-155 551.2 436 59.9
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.9e-151 540.0 449 58.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 4.0e-149 532.3 383 66.8
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.3e-144 517.3 311 78.8
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 8.1e-142 508.1 424 60.6
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.6e-140 503.1 311 76.2
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 9.9e-140 501.1 333 72.7
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 6.4e-139 498.4 303 78.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.2e-130 469.2 311 69.8
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.4e-122 444.1 468 45.7
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.1e-121 438.7 383 58.7
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.9e-116 422.2 288 68.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 7.9e-113 411.8 519 41.6
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 3.9e-112 409.5 517 42.7
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.2e-107 393.7 265 73.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.8e-104 384.0 241 77.6
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.4e-101 374.4 238 76.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.5e-90 337.0 526 44.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 3.7e-86 323.2 198 77.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.9e-82 310.8 341 51.3
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.2e-81 308.1 200 72.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.7e-78 297.7 238 60.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.6e-74 282.7 215 61.9
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.2e-68 265.0 166 78.3
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 4.3e-66 256.5 270 53.0
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.2e-52 211.8 195 57.4
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.1e-52 211.1 195 56.9
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 3.5e-52 210.3 157 68.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 8.9e-48 195.7 129 67.4
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 8.9e-48 195.7 129 67.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-47 195.3 144 62.5
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.4e-47 193.7 218 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 7.6e-47 192.6 189 50.8
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.8e-44 182.6 109 81.7
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.3e-42 177.2 175 52.6
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-40 171.8 409 27.6
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-37 162.2 168 51.2
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.1e-36 157.9 106 65.1
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 3.0e-35 154.1 165 49.1
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 4.3e-34 150.2 272 37.5
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.4e-32 144.4 269 37.9
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 4.0e-32 143.7 226 40.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.0e-31 141.4 171 45.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.4e-31 140.2 270 35.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.5e-28 130.6 98 67.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 4.6e-28 130.2 90 63.3
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 4.6e-28 130.2 90 63.3
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.8e-25 120.9 85 63.5
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.1e-24 117.5 95 61.1
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.3e-22 112.1 101 54.5
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.8e-17 93.6 74 62.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-16 90.5 59 67.8
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 5.3e-16 90.1 88 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.4e-08 64.7 166 27.7
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.9e-07 60.1 34 88.2


User provided reference genes

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