Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.1e-170 600.9 283 100.0
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.2e-132 474.9 262 88.2
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.9e-127 457.6 273 82.4
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.2e-124 448.4 272 82.0
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.3e-106 389.4 279 69.9
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.8e-104 382.5 216 85.6
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 8.2e-104 380.9 274 70.1
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.1e-103 378.6 275 68.0
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 9.1e-103 377.5 275 67.6
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.6e-99 366.7 275 62.9
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.1e-99 364.8 257 73.2
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 6.1e-99 364.8 276 64.1
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 1.2e-97 360.5 277 63.2
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.2e-97 360.5 277 63.5
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.0e-97 359.8 276 63.0
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 9.8e-97 357.5 276 62.7
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.7e-96 356.7 276 63.0
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 2.2e-96 356.3 276 63.4
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 2.8e-96 355.9 275 61.5
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 3.7e-96 355.5 275 62.2
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.8e-96 355.1 276 62.3
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 8.3e-96 354.4 276 63.4
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.3e-96 354.4 276 63.4
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 8.3e-96 354.4 272 63.6
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 3.1e-95 352.4 272 63.2
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 3.1e-95 352.4 272 61.8
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 4.1e-95 352.1 275 61.5
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 4.1e-95 352.1 274 63.1
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 7.0e-95 351.3 276 62.7
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 9.1e-95 350.9 271 64.2
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.2e-94 350.5 273 61.5
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.6e-94 350.1 272 62.5
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 3.5e-94 349.0 275 61.8
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 4.5e-94 348.6 275 61.1
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 5.9e-94 348.2 275 60.4
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 5.9e-94 348.2 271 63.1
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.3e-93 347.1 272 62.9
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.3e-93 346.3 275 62.2
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.8e-93 345.5 276 62.0
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.5e-92 343.6 287 58.2
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.5e-92 343.6 273 62.6
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.5e-92 343.6 281 59.1
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 2.5e-92 342.8 272 62.5
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 3.3e-92 342.4 272 61.4
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.2e-92 342.0 276 60.1
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 9.5e-92 340.9 277 62.1
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 9.5e-92 340.9 277 62.1
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 1.2e-91 340.5 272 62.1
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.6e-91 340.1 273 62.3
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.6e-91 340.1 272 61.4
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 2.1e-91 339.7 273 62.3
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.8e-91 339.3 275 59.6
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 8.0e-91 337.8 273 62.3
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.0e-91 337.8 266 61.3
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 1.4e-90 337.0 274 60.9
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.8e-90 336.7 275 59.3
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.3e-90 336.3 272 60.7
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.0e-90 335.9 270 59.3
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 5.2e-90 335.1 272 59.9
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 2.0e-89 333.2 276 60.1
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 2.0e-89 333.2 271 59.4
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 2.6e-89 332.8 273 60.4
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 5.7e-89 331.6 266 60.2
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 5.7e-89 331.6 285 58.9
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 7.5e-89 331.3 273 60.1
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 9.8e-89 330.9 273 61.5
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.3e-88 330.5 253 63.6
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 3.7e-88 328.9 275 58.2
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 9.2e-87 324.3 273 56.0
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 1.2e-86 323.9 280 58.2
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.2e-86 323.9 277 57.0
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.6e-86 323.6 271 57.9
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 3.5e-86 322.4 281 56.2
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 3.5e-86 322.4 241 64.3
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 4.5e-86 322.0 279 57.3
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.3e-85 320.5 276 57.6
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.7e-85 320.1 276 59.1
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 2.3e-85 319.7 278 57.2
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 3.8e-85 318.9 274 57.7
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 5.0e-85 318.5 274 57.7
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 5.0e-85 318.5 277 57.0
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 6.6e-85 318.2 271 58.3
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 8.6e-85 317.8 275 57.5
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.5e-84 317.0 275 60.0
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 1.5e-84 317.0 279 57.0
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.3e-84 315.8 277 57.4
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.3e-84 315.8 277 57.4
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 9.5e-84 314.3 275 59.3
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.6e-83 313.5 276 59.1
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.6e-83 313.5 276 59.1
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.6e-83 313.5 271 57.6
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 3.6e-83 312.4 273 58.6
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.7e-83 312.0 275 59.3
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 8.0e-83 311.2 266 57.9
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.0e-82 310.8 274 58.0
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.0e-82 310.8 274 58.0
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.4e-82 310.5 272 58.8
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.2e-81 307.4 271 55.7
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.6e-81 306.2 271 55.7
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 3.7e-80 302.4 276 56.2
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.1e-79 298.9 266 57.1
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.0e-79 298.1 265 56.6
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.7e-78 296.2 262 56.5
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.0e-77 294.3 266 56.8
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.9e-76 290.0 275 53.5
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.6e-75 287.0 260 54.6
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.2e-73 280.8 280 52.1
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.2e-72 276.6 263 54.0
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 8.3e-72 274.6 278 51.4
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.4e-71 273.9 263 54.0
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 3.2e-71 272.7 245 55.5
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 2.7e-70 269.6 275 52.4
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 2.7e-70 269.6 269 53.5
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.7e-69 266.9 252 52.8
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 3.0e-69 266.2 275 50.9
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 3.3e-68 262.7 247 54.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 7.3e-68 261.5 274 52.2
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 9.5e-68 261.2 203 59.1
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.2e-67 260.8 267 50.2
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 2.1e-67 260.0 262 51.9
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.1e-67 260.0 262 53.8
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 3.6e-67 259.2 266 52.6
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 5.2e-66 255.4 264 50.0
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 8.9e-66 254.6 270 50.7
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.2e-65 254.2 266 49.2
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.5e-65 253.8 264 50.0
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 2.0e-65 253.4 270 51.9
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 4.4e-65 252.3 276 50.0
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 4.4e-65 252.3 276 50.0
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 9.9e-65 251.1 276 49.6
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 4.9e-64 248.8 262 51.1
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 8.3e-64 248.1 265 51.3
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.4e-63 245.4 262 49.6
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 9.2e-63 244.6 265 49.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.9e-61 239.2 265 47.5
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.5e-60 236.5 241 51.9
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 4.4e-57 225.7 195 55.9
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.9e-55 220.3 270 46.7
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.9e-55 220.3 270 45.9
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 3.2e-55 219.5 270 46.3
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 6.0e-54 215.3 281 43.1
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 7.8e-54 214.9 265 45.7
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.3e-53 214.2 274 42.7
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 3.9e-53 212.6 300 40.0
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 2.5e-52 209.9 158 62.7
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 3.8e-48 196.1 190 54.7
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 8.4e-48 194.9 196 53.1
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 2.4e-47 193.4 291 38.1
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 3.6e-43 179.5 142 62.7
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 9.0e-42 174.9 273 40.7
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 9.9e-33 144.8 285 34.4
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.2e-30 137.9 156 48.7
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 6.9e-26 122.1 111 53.2
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.0e-21 108.2 308 28.9
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 3.0e-21 106.7 67 70.1
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 6.3e-19 99.0 172 31.4
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 1.4e-18 97.8 270 29.6
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 3.1e-18 96.7 109 45.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 3.4e-17 93.2 74 56.8
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.5e-12 77.8 67 61.2
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 4.7e-06 56.2 39 56.4


User provided reference genes

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