Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.9e-179 632.5 879 100.0
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.1e-64 251.1 160 81.9
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.2e-54 218.4 139 82.7
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.4e-53 213.8 135 83.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.1e-53 213.4 135 83.7
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.2e-53 213.0 133 85.0
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.2e-53 213.0 133 85.0
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 3.9e-51 207.6 160 66.9
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.4e-45 189.1 139 71.9
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 2.4e-45 188.3 139 70.5
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 4.2e-45 187.6 140 70.7
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.4e-45 187.2 123 82.1
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.2e-44 186.0 142 68.3
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-44 185.3 209 54.5
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.1e-44 185.3 140 68.6
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.3e-43 182.6 135 71.1
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.7e-43 179.9 139 73.4
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-42 179.1 139 66.2
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.5e-42 179.1 141 67.4
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.9e-42 178.7 135 68.9
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-42 178.3 137 65.7
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-42 178.3 139 65.5
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 3.3e-42 177.9 136 66.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 3.3e-42 177.9 140 67.1
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 4.3e-42 177.6 135 68.1
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 5.6e-42 177.2 133 70.7
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 5.6e-42 177.2 139 67.6
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 7.3e-42 176.8 140 68.6
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 7.3e-42 176.8 140 66.4
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 7.3e-42 176.8 140 66.4
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 9.6e-42 176.4 139 68.3
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 9.6e-42 176.4 141 66.0
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.6e-41 175.6 138 65.2
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 2.1e-41 175.3 141 66.0
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.8e-41 174.9 139 65.5
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.6e-41 174.5 139 64.7
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.6e-41 174.5 139 64.7
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 4.8e-41 174.1 134 70.1
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 8.1e-41 173.3 132 68.9
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 8.1e-41 173.3 155 58.1
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-40 172.9 139 64.7
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.4e-40 172.6 130 69.2
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 3.1e-40 171.4 130 69.2
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 4.0e-40 171.0 132 68.9
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 4.0e-40 171.0 139 65.5
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.2e-39 169.5 136 65.4
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.5e-39 169.1 135 64.4
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 4.5e-39 167.5 141 63.8
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.6e-39 166.8 137 63.5
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 7.6e-39 166.8 135 65.9
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.1e-37 162.9 136 64.0
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 4.2e-37 161.0 134 61.9
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 7.1e-37 160.2 139 57.6
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 7.1e-37 160.2 132 64.4
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 7.1e-37 160.2 130 66.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 7.1e-37 160.2 134 63.4
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 9.3e-37 159.8 125 68.0
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.6e-36 159.1 132 63.6
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.6e-36 157.5 131 64.9
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 6.0e-36 157.1 130 64.6
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 6.0e-36 157.1 139 62.6
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.0e-35 156.4 130 63.1
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 1.0e-35 156.4 125 64.0
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.3e-35 156.0 120 68.3
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 6.7e-35 153.7 125 63.2
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 8.7e-35 153.3 132 61.4
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 8.7e-35 153.3 131 63.4
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.1e-34 152.9 134 61.9
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.5e-34 152.5 129 62.8
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.5e-34 152.5 130 62.3
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.9e-34 152.1 135 60.7
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 1.9e-34 152.1 130 60.8
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 5.6e-34 150.6 140 57.1
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 2.1e-33 148.7 136 56.6
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 6.2e-33 147.1 133 59.4
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.1e-32 146.4 130 60.0
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.8e-32 145.6 132 56.1
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 4.0e-32 144.4 130 60.8
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.2e-31 142.9 129 59.7
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 7.6e-31 140.2 134 53.7
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.9e-30 138.3 96 69.8
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.9e-30 138.3 96 69.8
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 4.9e-30 137.5 91 73.6
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 6.4e-30 137.1 135 54.8
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-29 135.6 77 88.3
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 1.9e-29 135.6 95 68.4
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 9.3e-29 133.3 148 48.6
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 9.3e-29 133.3 96 70.8
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.6e-28 132.5 116 62.1
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 2.1e-28 132.1 96 67.7
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.1e-28 132.1 96 67.7
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.1e-28 132.1 96 67.7
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 2.7e-28 131.7 96 66.7
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 2.7e-28 131.7 107 65.4
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.7e-28 131.7 94 68.1
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 4.6e-28 131.0 96 66.7
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 4.6e-28 131.0 96 64.6
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.0e-27 129.8 96 65.6
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.0e-27 129.8 91 69.2
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.8e-27 129.0 97 66.0
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.8e-27 129.0 96 64.6
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 3.0e-27 128.3 96 63.5
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.1e-26 126.3 95 63.2
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.5e-26 125.9 91 68.1
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 4.3e-26 124.4 83 68.7
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.3e-25 122.9 88 69.3
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.6e-25 122.5 94 63.8
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 6.2e-25 120.6 94 61.7
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 8.1e-25 120.2 94 60.6
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.8e-24 119.0 165 45.5
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.1e-24 118.2 94 61.7
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.4e-21 109.4 89 59.6
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.6e-20 105.9 88 59.1
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.6e-20 105.9 95 53.7
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 7.9e-20 103.6 96 52.1
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.8e-19 102.4 104 51.9
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 3.9e-19 101.3 74 64.9
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 2.8e-17 95.1 94 52.1
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.5e-15 89.4 100 51.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 2.2e-14 85.5 56 73.2
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 3.9e-11 74.7 89 44.9
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 5.1e-11 74.3 94 41.5
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 8.7e-11 73.6 59 57.6
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.3e-10 71.6 58 58.6
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.5e-07 62.8 56 51.8
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 3.4e-07 61.6 170 29.4
CSS0019653 Camellia sinensis var. sinensis HOM05D043594 ORTHO05D113038 1.0e-06 60.1 33 78.8
CSS0041429 Camellia sinensis var. sinensis HOM05D043594 ORTHO05D111255 3.8e-06 58.2 31 83.9
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 5.0e-06 57.8 56 50.0


User provided reference genes

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