Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.9e-99 365.9 193 100.0
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.0e-84 317.0 210 83.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.1e-66 256.1 235 66.0
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.0e-65 252.3 235 66.0
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.0e-65 252.3 240 63.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.0e-65 252.3 240 63.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.0e-65 252.3 240 63.8
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 5.1e-65 251.5 235 65.1
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 8.8e-65 250.8 235 64.7
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.0e-64 249.6 235 64.7
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.6e-64 249.2 240 62.9
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 4.4e-64 248.4 235 64.7
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.4e-64 248.4 240 62.5
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.4e-64 248.4 240 62.5
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 4.4e-64 248.4 235 64.3
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.7e-64 248.1 236 63.6
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.4e-64 247.7 235 64.3
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.4e-64 247.7 236 64.0
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 9.7e-64 247.3 235 65.1
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-63 246.9 240 62.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.3e-63 246.9 240 62.5
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.3e-63 246.9 240 62.5
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.2e-63 246.1 235 64.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.2e-63 246.1 235 64.3
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 2.2e-63 246.1 235 63.8
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.7e-63 245.4 235 63.0
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 8.2e-63 244.2 235 62.6
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 8.2e-63 244.2 235 62.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.1e-62 243.8 235 63.8
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.4e-62 243.4 235 63.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.4e-62 243.4 235 63.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.8e-62 243.0 235 63.4
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.8e-62 243.0 235 63.4
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.8e-62 243.0 235 63.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.1e-62 242.3 235 61.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 4.1e-62 241.9 240 61.7
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.1e-62 241.9 235 61.7
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 5.3e-62 241.5 240 61.2
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 5.3e-62 241.5 235 61.3
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 7.0e-62 241.1 240 61.7
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 7.0e-62 241.1 235 63.0
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 9.1e-62 240.7 212 68.4
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.1e-62 240.7 235 61.7
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.1e-62 240.7 235 61.3
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.2e-61 240.4 235 62.1
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.2e-61 240.4 235 62.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.5e-61 240.0 235 61.3
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.5e-61 240.0 235 63.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.0e-61 239.6 235 61.7
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.6e-61 239.2 235 62.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 2.6e-61 239.2 235 62.1
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.5e-61 238.8 235 62.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 5.9e-61 238.0 235 61.7
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 7.7e-61 237.7 235 60.9
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.0e-60 237.3 235 61.3
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-60 236.9 235 61.7
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.3e-60 236.9 235 61.7
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.7e-60 236.5 235 60.9
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.2e-60 236.1 240 60.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.2e-60 236.1 235 60.9
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.2e-60 236.1 234 61.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.9e-60 235.7 240 61.2
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 2.9e-60 235.7 235 61.3
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 3.8e-60 235.3 235 60.9
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 3.8e-60 235.3 235 61.3
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 3.8e-60 235.3 235 60.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.0e-60 235.0 235 61.7
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.5e-59 232.6 235 60.0
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.2e-59 232.3 234 59.4
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.2e-59 232.3 235 60.0
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 4.2e-59 231.9 235 59.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 5.5e-59 231.5 240 57.9
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 7.2e-59 231.1 235 60.0
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 7.2e-59 231.1 235 58.7
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 7.2e-59 231.1 234 59.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 7.2e-59 231.1 236 58.5
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 9.4e-59 230.7 235 59.1
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 9.4e-59 230.7 235 59.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 9.4e-59 230.7 240 57.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 9.4e-59 230.7 235 60.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.1e-58 229.6 236 58.1
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.7e-58 229.2 235 57.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.1e-58 228.0 235 57.0
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.4e-57 226.9 223 61.9
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 5.2e-57 224.9 235 58.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 5.2e-57 224.9 236 58.9
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 8.8e-57 224.2 240 57.1
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 8.8e-57 224.2 235 57.4
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.1e-56 223.8 234 57.7
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-56 223.8 236 58.9
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-56 223.8 236 58.9
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.5e-56 223.4 235 58.3
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.5e-56 223.4 236 58.9
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.0e-56 223.0 235 57.4
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-56 222.2 236 58.5
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.7e-55 218.8 237 57.4
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 8.2e-55 217.6 240 55.8
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-54 217.2 235 57.0
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.1e-54 217.2 212 62.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.4e-54 216.1 236 57.6
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 5.3e-54 214.9 237 57.0
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 7.0e-54 214.5 240 56.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 2.6e-53 212.6 220 59.5
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 7.7e-53 211.1 236 56.4
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.2e-52 209.5 236 55.9
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.9e-52 209.1 237 56.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 6.5e-52 208.0 234 55.1
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 8.5e-52 207.6 237 57.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.5e-51 206.8 234 55.1
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.5e-51 206.8 234 55.6
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.9e-51 206.5 238 53.4
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.5e-51 206.1 234 55.1
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.2e-51 205.3 234 55.1
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 7.2e-51 204.5 235 54.5
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 7.2e-51 204.5 235 54.5
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 7.2e-51 204.5 235 54.5
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 7.2e-51 204.5 235 54.5
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 7.2e-51 204.5 235 54.5
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 9.4e-51 204.1 234 54.7
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 9.4e-51 204.1 234 54.7
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 9.4e-51 204.1 234 54.7
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 1.6e-50 203.4 235 54.0
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.6e-50 203.4 242 53.3
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 8.0e-50 201.1 235 53.2
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.4e-49 200.3 213 59.2
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 3.0e-49 199.1 203 62.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 4.0e-49 198.7 237 55.3
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 8.8e-49 197.6 237 55.3
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.5e-48 196.8 211 58.8
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.4e-48 195.7 242 51.2
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 9.7e-48 194.1 236 55.1
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.4e-46 189.5 221 53.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.0e-46 188.0 219 53.9
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.2e-45 187.2 237 54.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.7e-45 186.0 197 57.4
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 5.0e-44 181.8 195 59.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 8.5e-44 181.0 211 52.6
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.1e-43 180.6 202 57.4
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.2e-43 179.1 226 50.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 7.2e-43 177.9 206 53.4
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 9.4e-43 177.6 192 58.9
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.6e-42 175.6 221 52.5
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 8.0e-42 174.5 206 53.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.3e-41 172.9 204 53.4
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.7e-37 159.5 214 46.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.5e-37 158.7 106 78.3
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.7e-36 156.8 210 48.1
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.5e-35 152.9 238 44.5
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-33 147.5 124 66.1
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.8e-33 146.7 193 49.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.3e-28 130.6 219 42.5
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.7e-28 130.2 164 50.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.3e-28 129.8 234 44.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.9e-27 126.7 200 43.5
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.4e-24 115.9 89 66.3
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.6e-21 107.1 202 39.6
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.3e-20 104.0 195 38.5
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.2e-18 97.4 128 50.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.9e-14 83.6 115 47.0
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 5.4e-14 82.0 105 51.4
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 7.1e-06 55.1 69 52.2


User provided reference genes

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