Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.0e-271 939.5 483 100.0
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.6e-216 756.1 485 82.3
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 7.7e-211 737.3 466 81.3
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.9e-201 706.1 522 73.0
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 4.0e-199 698.4 468 77.4
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 7.5e-198 694.1 491 72.7
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 2.7e-187 659.1 481 71.1
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 6.6e-186 654.4 491 69.9
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 9.5e-185 650.6 467 71.5
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.5e-185 650.6 488 70.9
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.2e-184 650.2 472 71.0
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.6e-184 649.8 488 70.9
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.6e-184 649.8 488 70.9
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 6.8e-183 644.4 455 71.9
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 5.8e-182 641.3 458 73.1
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 7.5e-182 641.0 527 65.5
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.7e-181 639.8 457 71.8
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 3.7e-181 638.6 455 71.4
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 6.4e-181 637.9 468 70.3
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 8.3e-181 637.5 455 71.2
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 2.4e-180 636.0 476 69.5
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 5.4e-180 634.8 462 72.1
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.6e-179 633.3 454 70.5
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.1e-179 632.9 457 70.7
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 4.6e-179 631.7 454 71.1
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.3e-178 629.4 364 86.5
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 8.6e-178 627.5 403 77.4
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.1e-177 627.1 454 71.6
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-177 626.3 470 70.0
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.5e-177 625.9 374 85.3
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.2e-176 623.6 467 68.5
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.2e-176 623.6 476 67.6
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.2e-176 623.6 455 70.5
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 6.2e-176 621.3 408 75.2
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.7e-173 613.2 401 75.8
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 2.2e-173 612.8 463 68.5
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 2.9e-173 612.5 458 68.3
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.4e-173 610.9 458 68.6
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.4e-173 610.9 458 68.6
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.9e-172 609.8 456 67.8
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 9.2e-172 607.4 476 68.1
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.2e-171 607.1 455 68.8
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.6e-171 606.7 492 64.8
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.7e-171 605.9 478 67.2
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.5e-171 605.5 476 67.6
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 7.3e-169 597.8 473 65.8
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 7.3e-169 597.8 500 63.4
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 9.6e-169 597.4 466 65.5
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 9.6e-169 597.4 457 67.8
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 9.6e-169 597.4 454 69.2
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 1.2e-168 597.0 469 67.6
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 2.8e-168 595.9 483 66.0
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 8.1e-168 594.3 481 66.1
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 2.0e-166 589.7 458 67.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 4.4e-166 588.6 483 65.8
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 4.2e-164 582.0 458 64.2
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 5.4e-164 581.6 386 75.1
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.3e-162 577.0 452 67.5
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 3.0e-162 575.9 456 64.3
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 3.0e-162 575.9 407 71.5
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.5e-161 572.8 470 66.0
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.5e-161 572.8 409 71.9
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 1.3e-160 570.5 459 66.0
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.6e-160 570.1 456 64.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 2.1e-160 569.7 456 64.3
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 2.8e-160 569.3 457 64.1
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 8.1e-160 567.8 448 66.3
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.4e-159 567.0 410 70.7
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.8e-159 566.6 457 64.1
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 2.4e-159 566.2 456 62.9
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 3.1e-159 565.8 456 64.7
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 3.1e-159 565.8 459 65.1
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 9.0e-159 564.3 456 64.0
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 9.0e-159 564.3 456 63.6
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.6e-158 562.8 456 64.0
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 5.8e-158 561.6 402 71.4
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.7e-157 560.1 456 66.0
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 2.2e-157 559.7 457 63.5
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.2e-155 553.9 456 62.7
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.8e-154 550.1 457 65.6
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 4.8e-152 542.0 468 62.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.8e-150 535.0 350 74.6
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 5.5e-148 528.5 488 59.2
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.8e-146 523.5 484 59.1
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 7.4e-145 518.1 475 59.8
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.8e-144 515.4 409 67.0
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 4.0e-143 512.3 471 58.0
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.0e-142 510.0 386 68.4
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 5.5e-140 501.9 491 56.6
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 1.3e-138 497.3 465 57.2
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.8e-136 489.6 469 58.8
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 3.2e-132 476.1 368 65.8
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 3.2e-132 476.1 459 55.6
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 1.1e-129 467.6 467 55.2
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.7e-120 437.2 346 65.9
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.6e-110 403.3 283 71.7
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.6e-102 377.5 477 45.9
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 5.2e-98 362.5 464 45.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 7.0e-95 352.1 467 44.8
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 2.7e-94 350.1 466 44.8
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 9.5e-92 341.7 468 44.9
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 5.2e-90 335.9 317 59.0
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 1.7e-88 330.9 260 67.3
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.2e-80 303.9 203 73.4
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.2e-79 298.5 470 41.5
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.1e-74 283.5 346 49.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 2.2e-72 277.3 280 56.8
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 5.1e-69 266.2 191 69.6
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 8.1e-67 258.8 155 81.9
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.2e-59 232.6 162 70.4
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 6.8e-58 229.2 184 64.7
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-56 224.2 151 73.5
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.4e-48 196.1 142 70.4
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.4e-47 194.1 123 75.6
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-46 191.4 129 71.3
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.1e-45 186.4 153 64.7
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 6.2e-43 179.5 263 46.0
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.3e-37 161.0 171 58.5
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.5e-36 158.3 118 66.9
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.4e-34 151.0 105 66.7
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-32 144.4 93 76.3
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 3.9e-29 133.7 153 51.0
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.1e-26 125.6 307 30.6
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-25 122.1 87 69.0
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-24 118.2 78 74.4
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-21 108.6 69 78.3
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.3e-21 107.8 71 69.0
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 9.0e-18 95.9 82 58.5
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.1e-14 84.7 89 51.7
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.4e-13 82.0 58 67.2
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 5.5e-07 60.1 38 68.4


User provided reference genes

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