Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013923 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109872 1.8e-69 265.8 133 100.0
CSS0040402 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D112689 9.7e-55 216.9 133 85.0
CSS0029480 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D110723 3.0e-24 115.5 130 55.4
CSS0004560 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109985 2.6e-23 112.5 140 54.3
Ciclev10024926m.g Citrus clementina HOM05D001549 ORTHO05D003098 5.2e-16 88.2 45 88.9
CSS0023079 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D003098 8.9e-16 87.4 43 95.3
GSVIVG01005084001 Vitis vinifera HOM05D001549 ORTHO05D003098 2.0e-15 86.3 45 86.7
Dinv39910 Davidia involucrata HOM05D001549 ORTHO05D003098 4.4e-15 85.1 45 88.9
Lj4C136G10 Lonicera japonica HOM05D001549 ORTHO05D003098 4.4e-15 85.1 53 77.4
Rhsim10G0125500 Rhododendron simsii HOM05D001549 ORTHO05D003098 4.4e-15 85.1 45 86.7
CiPaw.01G027000 Carya illinoinensis HOM05D001549 ORTHO05D003098 5.7e-15 84.7 43 90.7
vmacro08940 Vaccinium macrocarpon HOM05D001549 ORTHO05D003098 7.5e-15 84.3 43 88.4
MD15G1274800 Malus domestica HOM05D001549 ORTHO05D003098 9.8e-15 84.0 45 86.7
FAN19G2984 Fragaria x ananassa HOM05D001549 ORTHO05D003098 2.2e-14 82.8 49 79.6
FAN28G2359 Fragaria x ananassa HOM05D001549 ORTHO05D003098 2.2e-14 82.8 49 79.6
QL06p043875 Quercus lobata HOM05D001549 ORTHO05D003098 2.2e-14 82.8 46 82.6
Atru.chr3.453 Acer truncatum HOM05D001549 ORTHO05D003098 2.8e-14 82.4 53 71.7
FvH4_1g14740 Fragaria vesca HOM05D001549 ORTHO05D003098 3.7e-14 82.0 45 84.4
FAN23G0473 Fragaria x ananassa HOM05D001549 ORTHO05D003098 3.7e-14 82.0 63 65.1
Actinidia12081 Actinidia chinensis HOM05D001549 ORTHO05D003098 4.9e-14 81.6 45 84.4
CANSAT01G2865 Cannabis sativa HOM05D001549 ORTHO05D003098 4.9e-14 81.6 45 84.4
Prupe.7G143000 Prunus persica HOM05D001549 ORTHO05D003098 4.9e-14 81.6 45 84.4
RcHm_v2.0_Chr1g0319111 Rosa chinensis HOM05D001549 ORTHO05D003098 4.9e-14 81.6 45 84.4
RcHm_v2.0_Chr2g0103681 Rosa chinensis HOM05D001549 ORTHO05D003098 4.9e-14 81.6 45 84.4
Cfa004221 Carpinus fangiana HOM05D001549 ORTHO05D003098 1.4e-13 80.1 46 80.4
Eucgr.I01019 Eucalyptus grandis HOM05D001549 ORTHO05D003098 1.4e-13 80.1 46 78.3
TAR628G1517 Trochodendron aralioides HOM05D001549 ORTHO05D003098 1.8e-13 79.7 45 86.7
Nn5g29397 Nelumbo nucifera HOM05D001549 ORTHO05D003098 3.2e-13 79.0 43 86.0
Haze_15180 Corylus avellana HOM05D001549 ORTHO05D003098 4.1e-13 78.6 45 82.2
Gohir.A11G045300 Gossypium hirsutum HOM05D001549 ORTHO05D003098 9.2e-13 77.4 42 83.3
Gohir.D11G048800 Gossypium hirsutum HOM05D001549 ORTHO05D003098 9.2e-13 77.4 42 83.3
PSO675G5453 Papaver somniferum HOM05D001549 ORTHO05D003098 9.2e-13 77.4 42 85.7
Sed0004252 Sechium edule HOM05D001549 ORTHO05D003098 1.6e-12 76.6 45 80.0
FAN26G1027 Fragaria x ananassa HOM05D001549 ORTHO05D003098 2.0e-12 76.3 45 80.0
Gorai.007G052400 Gossypium raimondii HOM05D001549 ORTHO05D003098 2.0e-12 76.3 42 81.0
DCAR_025681 Daucus carota HOM05D001549 ORTHO05D003098 2.7e-12 75.9 45 77.8
MD02G1160500 Malus domestica HOM05D001549 ORTHO05D003098 2.7e-12 75.9 43 81.4
Thecc.01G047400 Theobroma cacao HOM05D001549 ORTHO05D003098 4.5e-12 75.1 42 81.0
Potri.007G035900 Populus trichocarpa HOM05D001549 ORTHO05D003098 5.9e-12 74.7 42 85.7
Cc07_g05500 Coffea canephora HOM05D001549 ORTHO05D003098 1.0e-11 73.9 45 77.8
TWI73G0625 Tripterygium wilfordii HOM05D001549 ORTHO05D003098 1.0e-11 73.9 45 77.8
Aqoxy6G00926 Aquilegia oxysepala HOM05D001549 ORTHO05D003098 1.3e-11 73.6 43 79.1
COL.COLO4_11319 Corchorus olitorius HOM05D001549 ORTHO05D003098 1.3e-11 73.6 46 71.7
Sabra07G0031400 Salix brachista HOM05D001549 ORTHO05D003098 1.3e-11 73.6 42 83.3
Cpa.g.sc15.91 Carica papaya HOM05D001549 ORTHO05D003098 1.7e-11 73.2 45 75.6
MBI16_g19886_MAGBIO Magnolia biondii HOM05D001549 ORTHO05D003098 2.3e-11 72.8 45 73.3
ClCG02G017060 Citrullus lanatus HOM05D001549 ORTHO05D003098 3.9e-11 72.0 45 75.6
PGR042G3280 Punica granatum HOM05D001549 ORTHO05D003098 3.9e-11 72.0 46 71.7
Nitab4.5_0000108g0230 Nicotiana tabacum HOM05D001549 ORTHO05D003098 8.6e-11 70.9 41 80.5
Nitab4.5_0001014g0130 Nicotiana tabacum HOM05D001549 ORTHO05D003098 8.6e-11 70.9 41 80.5
Manes.13G130700 Manihot esculenta HOM05D001549 ORTHO05D003098 1.1e-10 70.5 40 82.5
CsaV3_2G003710 Cucumis sativus L. HOM05D001549 ORTHO05D003098 1.5e-10 70.1 45 73.3
Sc16g0001540 Simmondsia chinensis HOM05D001549 ORTHO05D003098 1.5e-10 70.1 43 74.4
THA.LOC104827094 Tarenaya hassleriana HOM05D001549 ORTHO05D003098 1.5e-10 70.1 41 78.0
Peaxi162Scf00535g00733 Petunia axillaris HOM05D001549 ORTHO05D003098 1.9e-10 69.7 40 80.0
MELO3C004423.2 Cucumis melo HOM05D001549 ORTHO05D003098 4.3e-10 68.6 43 74.4
Oeu021854.1 Olea europaea HOM05D001549 ORTHO05D003098 4.3e-10 68.6 42 71.4
CAN.G836.28 Capsicum annuum HOM05D001549 ORTHO05D003098 7.3e-10 67.8 41 78.0
ECA232G4408 Erigeron canadensis HOM05D001549 ORTHO05D003098 7.3e-10 67.8 42 76.2
HanXRQChr09g0264421 Helianthus annuus HOM05D001549 ORTHO05D003098 7.3e-10 67.8 43 74.4
Lsat_1_v5_gn_4_177661 Lactuca sativa HOM05D001549 ORTHO05D003098 7.3e-10 67.8 40 80.0
CDE01G0335 Ceratophyllum demersum HOM05D001549 ORTHO05D003098 3.6e-09 65.5 45 68.9
arahy.Tifrunner.gnm1.ann1.NDG4UC Arachis hypogaea HOM05D001549 ORTHO05D003098 6.1e-09 64.7 53 58.5
arahy.Tifrunner.gnm1.ann1.WXMK30 Arachis hypogaea HOM05D001549 ORTHO05D003098 6.1e-09 64.7 53 58.5
Psat4g089680 Pisum sativum HOM05D001549 ORTHO05D003098 6.1e-09 64.7 53 58.5
Solyc02g090180.3 Solanum lycopersicum HOM05D001549 ORTHO05D003098 6.1e-09 64.7 41 73.2
Sopen02g034870 Solanum pennellii HOM05D001549 ORTHO05D003098 6.1e-09 64.7 41 73.2
Hund16303 Selenicereus undatus HOM05D001549 ORTHO05D003098 8.0e-09 64.3 42 71.4
BcaB04g20082 Brassica carinata HOM05D001549 ORTHO05D003098 1.4e-08 63.5 41 68.3
Lsat_1_v5_gn_1_103300 Lactuca sativa HOM05D001549 ORTHO05D003098 1.4e-08 63.5 40 75.0
Lj4g0010242 Lotus japonicus HOM05D001549 ORTHO05D003098 2.3e-08 62.8 45 64.4
PGSC0003DMG400010077 Solanum tuberosum HOM05D001549 ORTHO05D003098 2.3e-08 62.8 41 70.7
HPP92_019638 Vanilla planifolia HOM05D001549 ORTHO05D003098 2.3e-08 62.8 43 65.1
Glyma.02G062400 Glycine max HOM05D001549 ORTHO05D003098 3.1e-08 62.4 45 60.0
Lalb_Chr16g0388481 Lupinus albus HOM05D001549 ORTHO05D003098 5.2e-08 61.6 43 67.4
SGA_v2.0_scaffold204G41617 Striga asiatica HOM05D001549 ORTHO05D003098 5.2e-08 61.6 55 52.7
Glyma.16G144700 Glycine max HOM05D001549 ORTHO05D003098 6.8e-08 61.2 45 62.2
Aa31LG1G15510 Aethionema arabicum HOM05D001549 ORTHO05D003098 1.2e-07 60.5 41 68.3
Lsat_1_v5_gn_3_122601 Lactuca sativa HOM05D001549 ORTHO05D003098 1.2e-07 60.5 38 76.3
Migut.H00490 Erythranthe guttata HOM05D001549 ORTHO05D003098 1.5e-07 60.1 40 72.5
Medtr8g079030 Medicago truncatula HOM05D001549 ORTHO05D003098 1.5e-07 60.1 43 65.1
ATR0733G205 Amborella trichopoda HOM05D001549 ORTHO05D003098 2.0e-07 59.7 40 65.0
AUR62003825 Chenopodium quinoa HOM05D001549 ORTHO05D003098 2.0e-07 59.7 42 64.3
Ca_22217_v3 Cicer arietinum L. HOM05D001549 ORTHO05D003098 2.0e-07 59.7 45 62.2
SalBow1G8516 Salvia bowleyana HOM05D001549 ORTHO05D003098 2.6e-07 59.3 39 69.2
Migut.L00243 Erythranthe guttata HOM05D001549 ORTHO05D003098 3.4e-07 58.9 40 70.0
Migut.L00820 Erythranthe guttata HOM05D001549 ORTHO05D003098 3.4e-07 58.9 40 70.0
AL8G44420 Arabidopsis lyrata HOM05D001549 ORTHO05D003098 4.4e-07 58.5 41 65.9
AT5G66960 Arabidopsis thaliana HOM05D001549 ORTHO05D003098 4.4e-07 58.5 41 65.9
CARHR280720 Cardamine hirsuta HOM05D001549 ORTHO05D003098 4.4e-07 58.5 41 65.9
AUR62001979 Chenopodium quinoa HOM05D001549 ORTHO05D003098 4.4e-07 58.5 42 59.5
TPR.G30330 Trifolium pratense HOM05D001549 ORTHO05D003098 4.4e-07 58.5 45 60.0
Zm00001eb100490 Zea mays HOM05D001549 ORTHO05D003098 4.4e-07 58.5 40 72.5
Carub.0008s2754 Capsella rubella HOM05D001549 ORTHO05D003098 5.8e-07 58.2 41 65.9
Sp2g29700 Schrenkiella parvula HOM05D001549 ORTHO05D003098 5.8e-07 58.2 41 65.9
BcaC04g23178 Brassica carinata HOM05D001549 ORTHO05D003098 7.5e-07 57.8 41 65.9
C09p11360 Brassica napus HOM05D001549 ORTHO05D003098 7.5e-07 57.8 41 65.9
BolC9t54024H Brassica oleracea HOM05D001549 ORTHO05D003098 7.5e-07 57.8 39 66.7
Phvul.003G248800 Phaseolus vulgaris HOM05D001549 ORTHO05D003098 7.5e-07 57.8 45 57.8
SHI08735 Sapria himalayana HOM05D001549 ORTHO05D003098 7.5e-07 57.8 32 81.2
VMungo0738G0001 Vigna mungo HOM05D001549 ORTHO05D003098 7.5e-07 57.8 45 57.8
unitig_21.g20533 Utricularia gibba HOM05D001549 ORTHO05D003098 9.8e-07 57.4 40 67.5
Thhalv10003673m.g Eutrema salsugineum HOM05D001549 ORTHO05D003098 1.7e-06 56.6 41 68.3
A09p09610 Brassica napus HOM05D001549 ORTHO05D003098 2.2e-06 56.2 41 65.9
BraA09t36610Z Brassica rapa HOM05D001549 ORTHO05D003098 2.2e-06 56.2 41 65.9


User provided reference genes

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