Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 0.0e+00 1140.2 597 100.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.9e-289 997.7 597 87.3
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 4.2e-283 977.6 598 85.8
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 5.1e-281 970.7 596 83.6
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 9.7e-280 966.5 597 84.9
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-273 944.9 597 84.9
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 9.1e-262 906.7 597 78.1
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.6e-261 906.0 597 79.2
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 5.9e-261 904.0 592 80.1
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 2.2e-260 902.1 597 78.9
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 3.8e-260 901.4 590 80.0
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.5e-259 899.4 599 79.0
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.5e-259 898.7 597 78.1
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 2.1e-258 895.6 598 77.9
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 6.1e-258 894.0 597 78.7
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.0e-257 891.3 597 78.4
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.2e-257 891.0 597 78.6
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 5.2e-257 891.0 592 77.5
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.2e-256 889.8 603 77.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.8e-256 886.7 592 76.9
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.8e-255 885.2 593 78.4
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.3e-255 884.0 597 77.2
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 6.3e-255 884.0 597 78.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 8.3e-255 883.6 597 77.1
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 5.4e-254 880.9 597 77.6
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 9.1e-254 880.2 602 76.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.2e-253 879.8 597 77.6
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.6e-253 879.4 598 76.6
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 2.0e-253 879.0 600 78.0
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.7e-253 878.6 594 77.4
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.0e-252 876.7 597 77.9
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.3e-252 876.3 595 76.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.9e-252 875.2 598 76.8
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 8.5e-252 873.6 598 77.1
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.1e-251 873.2 597 76.5
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.1e-251 873.2 597 77.1
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.5e-251 872.8 598 76.9
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.9e-251 872.5 592 77.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.9e-251 872.5 597 76.2
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.5e-251 872.1 597 76.0
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.5e-251 872.1 618 75.4
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.5e-251 872.1 598 78.3
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 3.2e-251 871.7 597 76.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.2e-251 871.7 595 75.8
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.2e-251 871.3 597 76.0
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 5.5e-251 870.9 595 76.1
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.2e-251 870.5 597 75.5
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 7.2e-251 870.5 596 77.0
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 9.5e-251 870.2 598 77.9
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.2e-250 869.8 593 77.4
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.2e-250 869.8 598 76.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.1e-250 869.0 597 76.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.8e-250 868.6 572 80.8
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 4.7e-250 867.8 595 75.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 6.1e-250 867.5 628 72.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 8.0e-250 867.1 599 77.5
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.4e-249 866.3 576 78.6
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.8e-249 865.9 597 75.4
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.0e-249 865.1 597 75.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 8.8e-249 863.6 598 76.6
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.2e-248 863.2 572 78.8
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.5e-248 862.8 590 76.1
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 3.4e-248 861.7 596 77.7
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 5.7e-248 860.9 597 75.0
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 7.5e-248 860.5 597 75.2
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.7e-247 859.4 598 75.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 3.7e-247 858.2 589 76.7
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 4.9e-247 857.8 597 75.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.1e-246 856.7 597 75.0
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.4e-246 856.3 599 74.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.7e-245 852.0 564 79.3
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 5.9e-245 850.9 591 74.8
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.3e-244 849.7 593 74.9
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 6.6e-244 847.4 595 74.8
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.1e-243 846.7 596 75.0
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.1e-243 846.7 600 76.7
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 9.5e-243 843.6 591 74.5
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.1e-242 842.4 591 75.0
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.1e-242 842.4 508 85.0
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 3.6e-242 841.6 591 74.8
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 3.6e-242 841.6 699 66.8
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 4.7e-242 841.3 592 74.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 4.7e-242 841.3 591 75.5
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 6.1e-242 840.9 591 74.5
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 6.1e-242 840.9 593 74.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 6.1e-242 840.9 564 77.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 8.0e-242 840.5 597 73.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 8.0e-242 840.5 511 84.5
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.4e-241 839.7 591 73.8
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 5.2e-241 837.8 594 74.1
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 5.2e-241 837.8 597 73.9
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 8.9e-241 837.0 697 64.3
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.2e-240 836.6 597 73.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-240 836.3 592 73.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 4.4e-240 834.7 590 73.7
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 9.8e-240 833.6 599 72.8
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.7e-239 832.8 590 73.4
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 2.9e-239 832.0 597 72.5
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.9e-239 832.0 591 73.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.7e-239 831.6 591 73.4
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.7e-239 831.6 591 74.3
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.4e-238 828.9 597 72.7
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 3.2e-238 828.6 598 74.6
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 4.6e-237 824.7 599 74.8
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 6.6e-236 820.8 599 74.3
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 8.6e-236 820.5 595 73.3
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 8.6e-236 820.5 596 74.0
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-235 819.7 592 73.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.9e-235 819.3 592 73.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.5e-235 817.0 591 73.4
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.0e-233 813.5 599 73.8
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 8.9e-233 810.4 580 74.5
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.9e-220 768.5 603 70.1
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.3e-215 753.4 571 71.1
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.6e-213 746.5 574 69.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.1e-211 740.3 595 66.1
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 3.8e-207 725.3 598 66.1
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.6e-205 719.9 591 66.0
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.3e-204 716.8 592 64.9
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 4.0e-201 705.3 595 64.2
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.5e-197 692.2 503 74.4
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.8e-196 689.9 433 84.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.2e-192 677.2 507 74.2
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.3e-180 637.1 447 74.7
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.9e-177 624.8 478 67.8
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 4.7e-165 585.5 535 61.5
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-155 553.1 378 78.0
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.7e-155 552.0 400 76.0
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.9e-152 542.0 372 75.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.8e-146 522.3 590 56.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 4.2e-142 509.2 522 52.5
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.3e-138 497.7 327 79.8
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.0e-132 476.5 309 81.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.9e-113 414.1 252 83.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 9.2e-113 411.8 536 47.0
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.1e-104 384.0 226 90.7
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.0e-95 355.1 592 40.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.3e-95 354.8 230 77.4
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.1e-78 298.5 242 65.7
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 7.6e-75 285.8 210 69.5
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.4e-65 255.0 131 97.7
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 8.7e-63 245.7 239 54.0
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.3e-62 243.8 322 42.2
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 7.9e-48 196.1 114 83.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.6e-46 191.0 266 43.6
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.1e-32 144.8 132 62.9
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-24 119.0 215 40.5
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.6e-24 117.5 186 42.5
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 6.1e-24 116.7 106 58.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 5.7e-22 110.2 104 58.7
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.8e-18 97.4 50 86.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 5.5e-17 93.6 85 60.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.6e-16 92.0 52 88.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.6e-16 92.0 52 88.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.9e-13 80.5 60 73.3
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 9.2e-12 76.3 60 65.0
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.2e-11 75.9 75 54.7
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.5e-09 68.2 57 56.1
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 9.5e-09 66.2 57 50.9
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.2e-08 65.9 60 56.7
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.8e-08 64.7 71 50.7
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 2.8e-08 64.7 71 50.7
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 3.6e-08 64.3 30 93.3
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 3.6e-08 64.3 70 51.4
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 3.6e-08 64.3 30 93.3
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 7.5e-06 56.6 51 66.7


User provided reference genes

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