Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.9e-96 353.6 179 100.0
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.7e-86 322.8 173 95.4
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.7e-86 322.8 173 95.4
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 6.6e-83 310.8 179 92.2
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.5e-58 229.2 151 78.8
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 4.3e-58 228.4 141 80.9
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 5.0e-54 214.9 152 74.3
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 1.1e-53 213.8 153 71.2
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 7.1e-53 211.1 155 69.7
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 9.3e-53 210.7 129 78.3
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 6.1e-52 208.0 150 71.3
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 2.3e-51 206.1 152 69.7
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 3.9e-51 205.3 138 69.6
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.1e-50 203.8 155 65.2
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 4.3e-50 201.8 146 70.5
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 9.7e-50 200.7 152 67.8
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.6e-49 199.9 158 62.0
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 2.2e-49 199.5 122 78.7
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.8e-49 199.1 154 69.5
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 1.1e-48 197.2 137 70.8
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 1.8e-48 196.4 152 69.1
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.8e-48 196.4 135 74.1
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 2.4e-48 196.1 158 61.4
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 2.4e-48 196.1 158 62.0
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 3.1e-48 195.7 130 73.1
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 4.1e-48 195.3 153 66.0
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 4.1e-48 195.3 153 68.6
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 6.9e-48 194.5 162 63.0
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 1.2e-47 193.7 166 59.0
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 2.6e-47 192.6 159 60.4
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 2.6e-47 192.6 159 60.4
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 2.6e-47 192.6 154 61.7
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 4.5e-47 191.8 156 64.1
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 4.5e-47 191.8 153 65.4
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 4.5e-47 191.8 157 61.1
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 5.9e-47 191.4 155 66.5
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.7e-46 189.9 156 63.5
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 2.2e-46 189.5 156 62.2
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 2.9e-46 189.1 152 65.8
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 2.9e-46 189.1 157 63.7
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 2.9e-46 189.1 157 63.7
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 2.9e-46 189.1 157 60.5
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 5.0e-46 188.3 155 63.9
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.4e-45 186.8 152 63.2
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.9e-45 186.4 153 64.7
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 1.9e-45 186.4 158 64.6
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 3.2e-45 185.7 152 61.8
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.2e-45 185.7 154 64.3
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 7.2e-45 184.5 156 61.5
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 9.4e-45 184.1 115 75.7
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.2e-44 183.7 154 60.4
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.6e-44 183.3 136 67.6
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 1.6e-44 183.3 134 69.4
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 2.7e-44 182.6 160 60.0
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 3.6e-44 182.2 116 75.0
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 3.6e-44 182.2 151 62.9
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 4.6e-44 181.8 124 72.6
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 4.6e-44 181.8 153 64.1
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 7.9e-44 181.0 152 64.5
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 7.9e-44 181.0 123 72.4
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 7.9e-44 181.0 135 66.7
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 1.0e-43 180.6 152 63.8
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 1.4e-43 180.3 152 62.5
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.8e-43 179.9 155 61.9
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 3.0e-43 179.1 157 58.0
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 3.9e-43 178.7 155 61.3
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 6.7e-43 177.9 125 67.2
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 6.7e-43 177.9 157 59.9
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 8.8e-43 177.6 103 81.6
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 8.8e-43 177.6 152 60.5
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 8.8e-43 177.6 154 61.7
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 4.3e-42 175.3 153 61.4
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 4.3e-42 175.3 155 60.0
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 9.7e-42 174.1 153 59.5
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.3e-41 173.7 155 59.4
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 2.2e-41 172.9 154 65.6
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 3.7e-41 172.2 121 68.6
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 3.7e-41 172.2 121 68.6
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 3.7e-41 172.2 121 68.6
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 3.7e-41 172.2 121 68.6
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 8.2e-41 171.0 105 78.1
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 8.2e-41 171.0 130 65.4
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 1.4e-40 170.2 121 67.8
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 1.4e-40 170.2 155 64.5
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 1.8e-40 169.9 133 66.2
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.8e-40 169.9 133 66.2
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 4.1e-40 168.7 136 62.5
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 6.9e-40 167.9 204 50.5
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 6.9e-40 167.9 153 58.2
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 6.9e-40 167.9 203 49.3
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 9.1e-40 167.5 155 58.7
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 9.1e-40 167.5 124 65.3
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 1.2e-39 167.2 123 63.4
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 1.5e-39 166.8 133 63.9
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 2.0e-39 166.4 127 63.0
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 2.6e-39 166.0 111 72.1
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 5.9e-39 164.9 155 57.4
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 7.7e-39 164.5 152 59.9
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 1.3e-38 163.7 135 58.5
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 2.9e-38 162.5 155 56.1
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 3.8e-38 162.2 140 59.3
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 6.5e-38 161.4 155 58.1
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 6.5e-38 161.4 155 58.1
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 6.5e-38 161.4 105 73.3
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 8.5e-38 161.0 154 56.5
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.1e-37 160.6 192 50.0
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.1e-37 160.6 202 47.5
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 1.4e-37 160.2 203 47.8
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 2.5e-37 159.5 189 47.6
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 9.4e-37 157.5 130 61.5
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 9.4e-37 157.5 152 55.3
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 1.2e-36 157.1 137 62.8
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 6.1e-36 154.8 203 48.8
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.8e-35 153.3 136 61.0
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 5.1e-35 151.8 151 51.0
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 1.5e-34 150.2 200 49.0
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 5.7e-34 148.3 123 61.0
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 9.7e-34 147.5 152 54.6
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 1.7e-33 146.7 147 55.1
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 6.3e-33 144.8 152 53.9
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 8.2e-33 144.4 159 51.6
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 1.8e-32 143.3 152 53.9
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 9.1e-32 141.0 162 50.6
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 4.5e-31 138.7 136 56.6
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.2e-29 132.5 105 60.0
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 4.7e-28 128.6 107 60.7
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 8.8e-27 124.4 103 59.2
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 4.4e-26 122.1 89 67.4
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 3.7e-25 119.0 112 50.9
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.0e-23 113.2 145 44.1
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 4.5e-23 112.1 109 53.2
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 4.5e-23 112.1 145 44.1
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 1.3e-22 110.5 103 57.3
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 5.2e-19 98.6 116 46.6
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 1.2e-18 97.4 85 60.0
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.6e-18 96.3 73 68.5
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 5.7e-18 95.1 152 40.1
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 4.7e-12 75.5 107 40.2
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 4.0e-11 72.4 57 63.2
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 1.2e-10 70.9 108 38.0
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 2.6e-10 69.7 156 38.5
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 3.4e-10 69.3 73 45.2
Dinv34878 Davidia involucrata HOM05D005159 ORTHO05D006237 4.9e-09 65.5 49 71.4


User provided reference genes

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