Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013857 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D108889 2.4e-34 148.3 74 100.0
CSS0038405 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 5.3e-26 120.6 85 75.3
CSS0027789 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 2.6e-25 118.2 85 76.5
CSS0022488 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 3.4e-25 117.9 86 72.1
Thecc.10G075700 Theobroma cacao HOM05D002588 ORTHO05D002979 1.9e-12 75.5 65 61.5
THA.LOC104824227 Tarenaya hassleriana HOM05D002588 ORTHO05D002979 3.3e-12 74.7 64 57.8
Eucgr.G02844 Eucalyptus grandis HOM05D002588 ORTHO05D002979 9.6e-12 73.2 63 63.5
Atru.chr12.789 Acer truncatum HOM05D002588 ORTHO05D002979 1.3e-11 72.8 65 60.0
Gohir.D05G296500 Gossypium hirsutum HOM05D002588 ORTHO05D002979 1.3e-11 72.8 65 58.5
Gorai.009G313500 Gossypium raimondii HOM05D002588 ORTHO05D002979 1.3e-11 72.8 65 58.5
Peaxi162Scf01175g00017 Petunia axillaris HOM05D002588 ORTHO05D002979 1.3e-11 72.8 66 56.1
GSVIVG01016262001 Vitis vinifera HOM05D002588 ORTHO05D002979 1.3e-11 72.8 63 61.9
Gohir.A05G296600 Gossypium hirsutum HOM05D002588 ORTHO05D002979 1.6e-11 72.4 65 60.0
Sopen05g034540 Solanum pennellii HOM05D002588 ORTHO05D002979 1.6e-11 72.4 67 56.7
PGSC0003DMG400023340 Solanum tuberosum HOM05D002588 ORTHO05D002979 1.6e-11 72.4 67 56.7
Duzib106G0610 Durio zibethinus HOM05D002588 ORTHO05D002979 2.1e-11 72.0 65 60.0
Potri.008G038700 Populus trichocarpa HOM05D002588 ORTHO05D002979 2.1e-11 72.0 67 59.7
THA.LOC104825232 Tarenaya hassleriana HOM05D002588 ORTHO05D002979 2.1e-11 72.0 64 56.2
Ciclev10031426m.g Citrus clementina HOM05D002588 ORTHO05D002979 2.8e-11 71.6 54 68.5
Manes.07G099100 Manihot esculenta HOM05D002588 ORTHO05D002979 2.8e-11 71.6 67 56.7
QL08p055600 Quercus lobata HOM05D002588 ORTHO05D002979 2.8e-11 71.6 67 56.7
Dinv36428 Davidia involucrata HOM05D002588 ORTHO05D002979 3.7e-11 71.2 67 56.7
CSS0017262 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 6.2e-11 70.5 65 58.5
CAN.G694.88 Capsicum annuum HOM05D002588 ORTHO05D002979 6.2e-11 70.5 67 53.7
Dinv31314 Davidia involucrata HOM05D002588 ORTHO05D002979 6.2e-11 70.5 65 58.5
Cpa.g.sc546.4 Carica papaya HOM05D002588 ORTHO05D043530 8.1e-11 70.1 65 55.4
Manes.13G137300 Manihot esculenta HOM05D002588 ORTHO05D002979 8.1e-11 70.1 67 56.7
Nitab4.5_0000476g0020 Nicotiana tabacum HOM05D002588 ORTHO05D002979 8.1e-11 70.1 67 55.2
Nitab4.5_0004212g0010 Nicotiana tabacum HOM05D002588 ORTHO05D002979 8.1e-11 70.1 67 55.2
FvH4_7g19320 Fragaria vesca HOM05D002588 ORTHO05D002979 1.4e-10 69.3 65 56.9
FAN06G4612 Fragaria x ananassa HOM05D002588 ORTHO05D002979 1.4e-10 69.3 65 56.9
FAN10G2679 Fragaria x ananassa HOM05D002588 ORTHO05D002979 1.4e-10 69.3 65 56.9
FAN10G3309 Fragaria x ananassa HOM05D002588 ORTHO05D002979 1.4e-10 69.3 65 56.9
vmacro07065 Vaccinium macrocarpon HOM05D002588 ORTHO05D002979 1.4e-10 69.3 68 55.9
TWI63G0459 Tripterygium wilfordii HOM05D002588 ORTHO05D002979 1.8e-10 68.9 67 56.7
PSO063G6954 Papaver somniferum HOM05D002588 ORTHO05D002979 3.1e-10 68.2 63 58.7
PSO339G4981 Papaver somniferum HOM05D002588 ORTHO05D002979 3.1e-10 68.2 63 58.7
Potri.010G223500 Populus trichocarpa HOM05D002588 ORTHO05D002979 3.1e-10 68.2 67 56.7
CANSAT56G3551 Cannabis sativa HOM05D002588 ORTHO05D002979 4.0e-10 67.8 65 53.8
CiPaw.01G271900 Carya illinoinensis HOM05D002588 ORTHO05D002979 4.0e-10 67.8 67 50.7
CDE07G1005 Ceratophyllum demersum HOM05D002588 ORTHO05D002979 4.0e-10 67.8 63 58.7
TAR636G1105 Trochodendron aralioides HOM05D002588 ORTHO05D002979 4.0e-10 67.8 67 55.2
Aa31LG2G8180 Aethionema arabicum HOM05D002588 ORTHO05D002979 5.3e-10 67.4 64 53.1
MD07G1173400 Malus domestica HOM05D002588 ORTHO05D002979 5.3e-10 67.4 65 56.9
Phvul.007G095500 Phaseolus vulgaris HOM05D002588 ORTHO05D002979 5.3e-10 67.4 65 55.4
Sabra10G0172900 Salix brachista HOM05D002588 ORTHO05D002979 5.3e-10 67.4 67 55.2
Cfa001652 Carpinus fangiana HOM05D002588 ORTHO05D002979 6.9e-10 67.0 67 55.2
Cc02_g11270 Coffea canephora HOM05D002588 ORTHO05D002979 6.9e-10 67.0 65 55.4
Haze_16882 Corylus avellana HOM05D002588 ORTHO05D002979 6.9e-10 67.0 67 55.2
MD01G1107800 Malus domestica HOM05D002588 ORTHO05D002979 6.9e-10 67.0 65 56.9
RcHm_v2.0_Chr1g0363201 Rosa chinensis HOM05D002588 ORTHO05D002979 6.9e-10 67.0 65 55.4
Hund12064 Selenicereus undatus HOM05D002588 ORTHO05D002979 6.9e-10 67.0 54 63.0
Actinidia06763 Actinidia chinensis HOM05D002588 ORTHO05D002979 9.0e-10 66.6 67 55.2
PGR142G4191 Punica granatum HOM05D002588 ORTHO05D002979 9.0e-10 66.6 54 63.0
Sed0026139 Sechium edule HOM05D002588 ORTHO05D002979 9.0e-10 66.6 67 55.2
Sp2g13170 Schrenkiella parvula HOM05D002588 ORTHO05D002979 1.2e-09 66.2 63 57.1
AT2G01720 Arabidopsis thaliana HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
BcaB07g30377 Brassica carinata HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
BcaC03g17070 Brassica carinata HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
C02p49880 Brassica napus HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
BolC2t11067H Brassica oleracea HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
BraA02t08245Z Brassica rapa HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
Carub.0005s0066 Capsella rubella HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
Psat6g183000 Pisum sativum HOM05D002588 ORTHO05D002979 1.5e-09 65.9 63 55.6
CARHR144280 Cardamine hirsuta HOM05D002588 ORTHO05D002979 2.0e-09 65.5 63 54.0
Thhalv10004162m.g Eutrema salsugineum HOM05D002588 ORTHO05D002979 2.0e-09 65.5 63 54.0
AL5G10810 Arabidopsis lyrata HOM05D002588 ORTHO05D002979 2.6e-09 65.1 63 54.0
BcaC06g31282 Brassica carinata HOM05D002588 ORTHO05D002979 2.6e-09 65.1 63 54.0
BcaC06g34132 Brassica carinata HOM05D002588 ORTHO05D002979 2.6e-09 65.1 63 54.0
A06p44160 Brassica napus HOM05D002588 ORTHO05D002979 2.6e-09 65.1 63 54.0
C07p32340 Brassica napus HOM05D002588 ORTHO05D002979 2.6e-09 65.1 63 54.0
BolC7t43770H Brassica oleracea HOM05D002588 ORTHO05D002979 2.6e-09 65.1 63 54.0
BraA06t27291Z Brassica rapa HOM05D002588 ORTHO05D002979 2.6e-09 65.1 63 54.0
CsaV3_5G036240 Cucumis sativus L. HOM05D002588 ORTHO05D002979 2.6e-09 65.1 65 53.8
Glyma.20G180300 Glycine max HOM05D002588 ORTHO05D002979 2.6e-09 65.1 65 53.8
Prupe.2G212600 Prunus persica HOM05D002588 ORTHO05D002979 2.6e-09 65.1 65 56.9
ATR0048G062 Amborella trichopoda HOM05D002588 ORTHO05D002979 3.4e-09 64.7 65 58.5
MELO3C012425.2 Cucumis melo HOM05D002588 ORTHO05D002979 3.4e-09 64.7 65 53.8
Oeu033862.1 Olea europaea HOM05D002588 ORTHO05D002979 3.4e-09 64.7 63 58.7
Sed0015823 Sechium edule HOM05D002588 ORTHO05D002979 3.4e-09 64.7 67 53.7
Aqoxy1G01222 Aquilegia oxysepala HOM05D002588 ORTHO05D002979 4.5e-09 64.3 65 53.8
A02p32280 Brassica napus HOM05D002588 ORTHO05D002979 4.5e-09 64.3 63 54.0
ClCG05G021060 Citrullus lanatus HOM05D002588 ORTHO05D002979 4.5e-09 64.3 65 53.8
SGA_v2.0_scaffold625G53243 Striga asiatica HOM05D002588 ORTHO05D002979 4.5e-09 64.3 65 56.9
FAN01G2618 Fragaria x ananassa HOM05D002588 ORTHO05D002979 5.8e-09 63.9 68 54.4
FAN03G2887 Fragaria x ananassa HOM05D002588 ORTHO05D002979 5.8e-09 63.9 68 54.4
MBI07_g26023_MAGBIO Magnolia biondii HOM05D002588 ORTHO05D002979 5.8e-09 63.9 65 55.4
Lalb_Chr21g0306131 Lupinus albus HOM05D002588 ORTHO05D002979 7.6e-09 63.5 63 55.6
Ca_10565_v3 Cicer arietinum L. HOM05D002588 ORTHO05D002979 1.0e-08 63.2 63 52.4
SGA_v2.0_scaffold51G18688 Striga asiatica HOM05D002588 ORTHO05D002979 1.0e-08 63.2 63 55.6
VMungo0720G1406 Vigna mungo HOM05D002588 ORTHO05D002979 1.0e-08 63.2 63 55.6
arahy.Tifrunner.gnm1.ann1.9IJI7K Arachis hypogaea HOM05D002588 ORTHO05D002979 1.3e-08 62.8 63 54.0
arahy.Tifrunner.gnm1.ann1.A8DF3L Arachis hypogaea HOM05D002588 ORTHO05D002979 1.3e-08 62.8 63 54.0
Migut.F01749 Erythranthe guttata HOM05D002588 ORTHO05D002979 1.3e-08 62.8 56 55.4
Glyma.10G210300 Glycine max HOM05D002588 ORTHO05D002979 1.3e-08 62.8 63 54.0
Medtr1g094870 Medicago truncatula HOM05D002588 ORTHO05D002979 1.3e-08 62.8 63 52.4
DCAR_006431 Daucus carota HOM05D002588 ORTHO05D002979 1.7e-08 62.4 65 53.8
HanXRQChr14g0456811 Helianthus annuus HOM05D002588 ORTHO05D002979 2.2e-08 62.0 68 50.0
SalBow3G4494 Salvia bowleyana HOM05D002588 ORTHO05D002979 2.2e-08 62.0 63 58.7
TPR.G1912 Trifolium pratense HOM05D002588 ORTHO05D002979 2.2e-08 62.0 63 52.4
MSTRG.8141 Avicennia marina HOM05D002588 ORTHO05D002979 2.9e-08 61.6 65 53.8
Sabra08G0026400 Salix brachista HOM05D002588 ORTHO05D002979 2.9e-08 61.6 81 49.4
Lsat_1_v5_gn_2_112401 Lactuca sativa HOM05D002588 ORTHO05D002979 3.8e-08 61.2 67 49.3
Sc09g0006230 Simmondsia chinensis HOM05D002588 ORTHO05D002979 4.9e-08 60.8 40 75.0
Gohir.A10G205100 Gossypium hirsutum HOM05D002588 ORTHO05D002979 6.5e-08 60.5 65 53.8
Gohir.D10G213300 Gossypium hirsutum HOM05D002588 ORTHO05D002979 8.4e-08 60.1 65 52.3
Gorai.011G238700 Gossypium raimondii HOM05D002588 ORTHO05D002979 8.4e-08 60.1 65 52.3
Rhsim03G0119400 Rhododendron simsii HOM05D002588 ORTHO05D002979 8.4e-08 60.1 33 81.8
ECA238G1708 Erigeron canadensis HOM05D002588 ORTHO05D002979 1.1e-07 59.7 68 47.1
Lalb_Chr02g0142241 Lupinus albus HOM05D002588 ORTHO05D002979 1.1e-07 59.7 63 50.8
HPP92_025837 Vanilla planifolia HOM05D002588 ORTHO05D002979 1.4e-07 59.3 65 50.8
Ah.16g106390 Amaranthus hybridus HOM05D002588 ORTHO05D002979 2.5e-07 58.5 65 50.8
Os04g0693000 Oryza sativa ssp. japonica HOM05D002588 ORTHO05D002979 2.5e-07 58.5 54 55.6
Zm00001eb076610 Zea mays HOM05D002588 ORTHO05D002979 2.5e-07 58.5 54 53.7
Lj5g0026132 Lotus japonicus HOM05D002588 ORTHO05D002979 3.2e-07 58.2 65 52.3
AUR62018243 Chenopodium quinoa HOM05D002588 ORTHO05D002979 5.5e-07 57.4 65 49.2
unitig_22.g5957 Utricularia gibba HOM05D002588 ORTHO05D002979 5.5e-07 57.4 65 50.8
AUR62037764 Chenopodium quinoa HOM05D002588 ORTHO05D002979 9.3e-07 56.6 65 47.7
PGSC0003DMG400009917 Solanum tuberosum HOM05D002588 ORTHO05D002979 3.5e-06 54.7 67 44.8
Migut.C00376 Erythranthe guttata HOM05D002588 ORTHO05D002979 6.0e-06 53.9 63 47.6


User provided reference genes

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