Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.9e-256 888.6 443 100.0
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.8e-206 722.6 504 76.8
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 6.7e-201 704.1 511 74.4
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 8.2e-167 590.9 488 65.4
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 3.4e-144 515.8 481 59.5
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 5.9e-141 505.0 494 55.9
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 5.9e-141 505.0 462 59.5
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 4.7e-138 495.4 492 54.3
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 3.5e-133 479.2 498 53.6
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 8.6e-132 474.6 498 53.4
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 5.6e-131 471.9 493 52.7
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 7.3e-131 471.5 495 53.5
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 9.5e-131 471.1 503 52.9
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 1.6e-130 470.3 485 52.2
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 8.0e-130 468.0 493 51.7
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 1.8e-129 466.8 499 52.1
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 4.0e-129 465.7 496 50.8
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 6.8e-129 464.9 475 53.5
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 1.1e-126 457.6 496 50.4
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 1.4e-126 457.2 486 51.6
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 1.9e-126 456.8 474 53.8
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 4.1e-126 455.7 491 51.7
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 1.6e-125 453.8 498 50.2
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 2.7e-125 453.0 485 52.2
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 7.8e-125 451.4 448 56.5
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 1.3e-124 450.7 478 51.0
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 5.0e-124 448.7 496 49.0
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 1.9e-123 446.8 485 51.8
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 1.9e-123 446.8 496 50.4
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 1.9e-123 446.8 489 50.9
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 7.3e-123 444.9 493 50.5
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 2.8e-122 443.0 478 51.7
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 1.4e-121 440.7 483 51.6
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 1.8e-121 440.3 487 49.9
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 1.2e-120 437.6 495 49.7
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 3.4e-120 436.0 499 50.1
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 4.4e-120 435.6 495 48.9
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 5.8e-120 435.3 497 48.5
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 9.8e-120 434.5 500 48.6
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 9.8e-120 434.5 498 48.0
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 1.3e-119 434.1 482 50.8
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 2.2e-119 433.3 495 47.9
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 2.9e-119 433.0 496 50.0
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 8.3e-119 431.4 496 48.6
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 4.1e-118 429.1 485 50.1
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 7.8e-117 424.9 489 48.3
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 1.3e-116 424.1 493 48.1
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 1.7e-116 423.7 493 47.5
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 3.0e-116 422.9 489 48.1
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 6.6e-116 421.8 421 53.7
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 1.6e-114 417.2 479 46.3
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.1e-114 416.8 485 48.5
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.8e-114 416.4 478 47.3
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 4.7e-114 415.6 496 47.4
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 6.2e-114 415.2 492 48.6
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 6.2e-114 415.2 490 48.0
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 1.1e-113 414.5 490 47.1
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 1.4e-113 414.1 489 48.9
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 1.2e-112 411.0 471 49.9
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 1.2e-112 411.0 500 46.4
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 1.5e-112 410.6 489 47.0
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 1.7e-111 407.1 488 47.7
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.9e-111 406.4 484 46.1
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 6.4e-111 405.2 502 46.6
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 8.3e-111 404.8 481 46.8
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 1.9e-110 403.7 491 47.5
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.9e-110 403.7 481 46.8
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 2.4e-110 403.3 554 44.0
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 4.1e-110 402.5 473 46.7
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 5.4e-110 402.1 486 46.7
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 7.1e-110 401.7 501 46.7
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 1.2e-109 401.0 480 45.6
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 3.5e-109 399.4 488 46.5
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 4.6e-109 399.1 486 46.3
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 6.0e-109 398.7 498 46.4
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 5.1e-108 395.6 493 45.8
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 1.5e-107 394.0 486 45.7
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.5e-107 393.3 481 45.5
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 3.3e-107 392.9 478 49.4
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 3.6e-106 389.4 503 45.1
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 4.4e-104 382.5 473 47.6
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 4.4e-104 382.5 476 45.4
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 4.9e-103 379.0 474 44.3
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.1e-102 377.9 477 43.4
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.2e-101 374.4 515 44.3
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 1.6e-101 374.0 393 52.2
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 2.7e-101 373.2 480 44.0
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 2.3e-100 370.2 444 48.2
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.5e-99 367.5 497 41.9
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 1.6e-98 364.0 468 44.2
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 2.8e-98 363.2 384 50.0
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 4.8e-98 362.5 467 45.6
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 3.1e-97 359.8 483 42.4
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 7.1e-94 348.6 470 45.5
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 8.7e-92 341.7 327 53.2
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 3.6e-90 336.3 418 45.9
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 6.2e-90 335.5 480 42.1
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 5.3e-89 332.4 411 43.6
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 9.3e-86 321.6 698 33.2
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 1.6e-85 320.9 419 43.4
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 1.9e-83 313.9 324 50.6
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 1.4e-78 297.7 374 45.2
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 6.2e-74 282.3 345 47.5
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 5.8e-72 275.8 497 36.2
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 2.5e-70 270.4 425 42.4
Glyma.02G240302 Glycine max HOM05D005252 ORTHO05D006788 2.9e-63 246.9 225 54.2
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 8.2e-58 228.8 471 35.5
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 4.1e-57 226.5 287 46.7
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 1.2e-56 224.9 256 50.4
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.3e-50 204.9 282 43.6
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 7.7e-48 195.7 432 31.5
CDE04G0719 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 3.8e-47 193.4 223 47.5
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 6.1e-45 186.0 283 39.2
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 6.7e-44 182.6 211 49.3
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 1.3e-39 168.3 365 34.8
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 2.3e-36 157.5 193 49.7
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 4.8e-34 149.8 143 52.4
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.2e-32 145.2 86 81.4
ATR0807G103 Amborella trichopoda HOM05D005252 ORTHO05D006788 1.5e-30 138.3 205 40.0
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 3.6e-29 133.7 331 33.5
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 3.6e-29 133.7 192 44.3
Mapoly0060s0114 Marchantia polymorpha HOM05D005252 ORTHO05D006788 6.1e-29 132.9 251 34.7
CSS0015528 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 6.3e-26 122.9 79 91.1
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 1.6e-24 118.2 188 42.6
SEGI_29343 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 2.5e-14 84.3 95 48.4
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 2.8e-13 80.9 518 24.7
BcaC03g18542 Brassica carinata HOM05D005252 ORTHO05D032136 1.8e-12 78.2 58 63.8
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 5.2e-12 76.6 284 26.4
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 2.6e-11 74.3 187 28.3
AagrBONN_evm.TU.Sc2ySwM_344.1682 Anthoceros agrestis HOM05D005252 ORTHO05D006788 7.0e-09 66.2 104 44.2
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 5.6e-06 56.6 44 59.1


User provided reference genes

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