Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.3e-146 523.1 268 100.0
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 7.0e-145 517.3 268 99.3
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.2e-56 224.2 305 50.8
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 9.7e-54 214.5 261 57.5
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 5.9e-51 205.3 274 54.7
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 4.7e-40 169.1 294 48.0
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 6.1e-40 168.7 325 43.1
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 2.0e-38 163.7 313 44.7
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 2.2e-34 150.2 253 47.4
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 3.8e-34 149.4 239 50.6
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.5e-33 147.5 265 45.7
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.9e-33 147.1 317 42.3
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 5.5e-33 145.6 343 38.8
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.2e-32 144.4 325 40.9
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.6e-32 144.1 324 41.7
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 8.8e-31 138.3 250 48.0
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.7e-29 132.9 317 39.1
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.1e-28 129.8 300 41.3
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.2e-27 127.9 320 37.2
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 6.1e-24 115.5 281 39.1
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 6.1e-24 115.5 281 39.1
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.8e-23 114.0 301 38.2
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 5.2e-23 112.5 178 48.3
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 6.8e-23 112.1 320 37.5
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 2.0e-22 110.5 304 38.2
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.4e-22 109.8 309 40.5
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 9.8e-22 108.2 310 37.7
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 1.3e-21 107.8 288 37.5
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.3e-21 107.8 262 37.8
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 2.8e-21 106.7 330 37.9
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.7e-21 106.3 309 40.1
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.3e-21 105.5 309 39.8
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 6.3e-21 105.5 273 37.7
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 3.1e-20 103.2 311 39.9
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 3.1e-20 103.2 320 34.7
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 4.1e-20 102.8 255 40.4
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 5.4e-20 102.4 300 37.0
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 5.4e-20 102.4 333 36.6
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 9.1e-20 101.7 299 35.8
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 9.1e-20 101.7 285 39.6
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.0e-19 100.5 207 42.5
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 2.7e-19 100.1 273 39.6
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 4.5e-19 99.4 255 39.2
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 7.7e-19 98.6 259 40.2
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.0e-18 98.2 307 38.8
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.0e-18 98.2 291 36.4
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.3e-18 97.8 294 38.4
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.3e-18 97.8 294 38.4
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 2.3e-18 97.1 302 36.4
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 5.0e-18 95.9 292 36.6
Solyc01g106180.3 Solanum lycopersicum HOM05D009304 ORTHO05D003109 6.6e-18 95.5 171 44.4
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.9e-17 94.0 290 36.6
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.5e-17 93.6 286 37.1
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.5e-17 93.6 316 35.1
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 3.3e-17 93.2 333 33.9
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 4.2e-17 92.8 289 37.0
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 5.5e-17 92.4 306 33.7
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 5.5e-17 92.4 288 36.8
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 5.5e-17 92.4 311 33.8
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 7.2e-17 92.0 331 35.6
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 2.8e-16 90.1 306 35.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.8e-16 90.1 314 31.8
Sopen12g021050 Solanum pennellii HOM05D009304 ORTHO05D003109 2.8e-16 90.1 171 43.3
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 3.6e-16 89.7 331 34.1
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 6.1e-16 89.0 330 35.8
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 6.1e-16 89.0 331 37.8
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 1.0e-15 88.2 306 31.4
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 1.4e-15 87.8 305 33.4
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.4e-15 87.8 299 33.4
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 1.8e-15 87.4 304 34.2
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 3.0e-15 86.7 292 35.6
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.0e-15 86.7 310 33.5
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 4.0e-15 86.3 319 32.9
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 4.0e-15 86.3 325 32.9
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.0e-15 86.3 312 33.7
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 4.0e-15 86.3 293 34.1
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 4.0e-15 86.3 163 42.3
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 6.8e-15 85.5 311 32.2
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 8.9e-15 85.1 304 34.5
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.2e-14 84.7 247 39.7
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.2e-14 84.7 227 37.0
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 1.5e-14 84.3 324 34.0
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.0e-14 84.0 331 31.4
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.0e-14 84.0 298 35.2
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.0e-14 84.0 290 34.1
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 2.0e-14 84.0 333 34.2
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 3.4e-14 83.2 249 39.0
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 4.4e-14 82.8 327 36.1
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 5.7e-14 82.4 325 33.8
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 7.5e-14 82.0 319 32.9
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 7.5e-14 82.0 298 34.9
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 7.5e-14 82.0 331 35.6
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 9.8e-14 81.6 330 32.7
MSTRG.14193 Avicennia marina HOM05D033380 ORTHO05D026975 1.7e-13 80.9 245 33.5
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.7e-13 80.9 298 34.9
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 1.7e-13 80.9 331 34.7
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 2.2e-13 80.5 289 33.2
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 2.8e-13 80.1 307 31.3
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 3.7e-13 79.7 313 35.5
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 1.1e-12 78.2 315 31.7
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 1.4e-12 77.8 326 32.2
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.4e-12 77.8 302 34.8
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.8e-12 77.4 309 33.7
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.8e-12 77.4 342 30.1
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 2.4e-12 77.0 299 34.4
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 4.1e-12 76.3 297 34.7
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 5.4e-12 75.9 288 33.0
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 7.0e-12 75.5 314 31.5
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 9.2e-12 75.1 300 31.7
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 9.2e-12 75.1 294 33.7
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 9.2e-12 75.1 309 35.9
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 2.7e-11 73.6 309 32.7
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 3.5e-11 73.2 336 31.8
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 4.5e-11 72.8 292 33.6
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 7.8e-11 72.0 320 31.6
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.0e-10 71.6 267 36.7
PGR142G1157 Punica granatum HOM05D010652 ORTHO05D003109 1.0e-10 71.6 284 35.9
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.3e-10 71.2 297 34.3
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.3e-10 71.2 297 34.3
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 2.3e-10 70.5 308 32.1
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 2.3e-10 70.5 270 33.7
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.9e-10 70.1 298 30.2
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.9e-10 70.1 298 30.2
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 2.9e-10 70.1 305 31.8
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 6.6e-10 68.9 301 32.2
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 6.6e-10 68.9 283 32.2
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 8.6e-10 68.6 267 36.7
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 1.9e-09 67.4 230 33.5
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 1.9e-09 67.4 290 31.7
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 1.9e-09 67.4 295 33.6
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 3.3e-09 66.6 248 33.9
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 3.3e-09 66.6 309 31.7
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 5.6e-09 65.9 261 33.3
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 7.3e-09 65.5 290 31.4
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 7.3e-09 65.5 290 31.4
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 7.3e-09 65.5 290 31.4
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 7.3e-09 65.5 341 30.8
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 9.5e-09 65.1 249 34.1
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 1.2e-08 64.7 289 33.6
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.2e-08 64.7 299 32.4
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 1.6e-08 64.3 205 38.0
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.6e-08 64.3 266 33.5
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 1.6e-08 64.3 300 31.7
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 2.8e-08 63.5 235 32.8
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 3.6e-08 63.2 286 31.8
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 4.7e-08 62.8 243 32.9
Migut.H01045 Erythranthe guttata HOM05D009304 ORTHO05D026975 6.1e-08 62.4 288 32.3
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 6.1e-08 62.4 315 31.7
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 6.1e-08 62.4 253 30.0
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.0e-08 62.0 332 32.5
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 8.0e-08 62.0 254 35.4
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 1.0e-07 61.6 290 31.0
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 1.0e-07 61.6 296 30.7
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 1.0e-07 61.6 311 30.9
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 1.8e-07 60.8 276 34.8
Phvul.005G106600 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 1.8e-07 60.8 273 31.5
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 2.3e-07 60.5 251 35.9
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 3.1e-07 60.1 253 35.6
Glyma.U031322 Glycine max HOM05D010177 ORTHO05D003109 4.0e-07 59.7 278 35.3
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 4.0e-07 59.7 201 36.3
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 5.2e-07 59.3 310 31.3
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 5.2e-07 59.3 294 31.6
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 5.2e-07 59.3 284 31.7
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 6.8e-07 58.9 295 32.2
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 6.8e-07 58.9 242 30.6
Potri.007G078350 Populus trichocarpa HOM05D010652 ORTHO05D003109 6.8e-07 58.9 190 36.3
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 8.9e-07 58.5 241 34.0
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 8.9e-07 58.5 301 31.2
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 8.9e-07 58.5 313 31.3
Lsat_1_v5_gn_3_39360 Lactuca sativa HOM05D009304 ORTHO05D003109 1.2e-06 58.2 296 29.4
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.2e-06 58.2 295 32.5
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 1.2e-06 58.2 289 30.8
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 1.5e-06 57.8 286 32.5
Solyc04g007740.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.6e-06 57.0 99 43.4
Solyc11g043180.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.4e-06 56.6 99 41.4
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 4.4e-06 56.2 283 30.0
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 4.4e-06 56.2 283 30.0
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 4.4e-06 56.2 283 30.0
Eucgr.K00944 Eucalyptus grandis HOM05D010652 ORTHO05D003109 4.4e-06 56.2 313 31.3
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.4e-06 56.2 285 31.2
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.4e-06 56.2 285 31.2
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 4.4e-06 56.2 302 28.5
Thecc.02G174400 Theobroma cacao HOM05D053928 ORTHO05D003109 4.4e-06 56.2 159 35.8
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 5.8e-06 55.8 308 30.8
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 7.5e-06 55.5 281 32.0


User provided reference genes

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