Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.4e-120 436.4 234 100.0
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.2e-113 413.3 235 96.6
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 4.0e-112 408.3 233 96.1
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 1.5e-98 363.2 236 86.0
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 6.8e-96 354.4 235 81.7
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 1.5e-95 353.2 236 83.1
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 1.2e-92 343.6 236 79.7
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.1e-92 342.8 236 79.7
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 2.7e-92 342.4 236 79.2
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 2.7e-92 342.4 236 79.2
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 2.3e-91 339.3 209 85.6
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 2.3e-91 339.3 228 80.7
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 8.6e-91 337.4 209 84.7
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 4.7e-89 331.6 236 78.0
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 4.7e-89 331.6 240 76.7
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 1.4e-88 330.1 235 79.1
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 4.0e-88 328.6 231 77.1
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 6.9e-88 327.8 204 84.8
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 2.0e-87 326.2 230 77.8
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 2.6e-87 325.9 238 77.3
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 4.4e-87 325.1 234 76.1
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 7.6e-87 324.3 234 76.1
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 7.6e-87 324.3 209 83.3
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 7.6e-87 324.3 238 76.5
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 1.3e-86 323.6 235 78.3
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 2.2e-86 322.8 209 85.6
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 3.8e-86 322.0 236 76.7
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 3.8e-86 322.0 228 79.4
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 1.1e-85 320.5 238 76.1
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.4e-85 320.1 237 78.5
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.9e-85 319.7 222 78.8
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.9e-85 319.7 204 82.8
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 2.4e-85 319.3 211 82.5
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 3.2e-85 318.9 214 80.4
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 7.1e-85 317.8 235 75.3
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 9.3e-85 317.4 240 73.8
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 9.3e-85 317.4 236 75.4
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 1.2e-84 317.0 232 72.8
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 1.6e-84 316.6 214 80.8
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 2.7e-84 315.8 238 74.8
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 3.5e-84 315.5 229 77.7
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 4.6e-84 315.1 209 82.8
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 6.0e-84 314.7 234 74.4
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 7.8e-84 314.3 233 76.4
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 7.8e-84 314.3 234 74.8
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 1.3e-83 313.5 231 74.0
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 1.3e-83 313.5 214 80.4
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 1.7e-83 313.2 230 75.2
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 3.0e-83 312.4 204 81.4
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 3.9e-83 312.0 241 73.0
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 6.6e-83 311.2 217 79.7
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 6.6e-83 311.2 237 74.3
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 8.7e-83 310.8 247 72.1
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 1.1e-82 310.5 209 80.9
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 1.5e-82 310.1 238 74.8
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 1.5e-82 310.1 209 79.9
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 1.5e-82 310.1 221 76.9
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 1.5e-82 310.1 215 80.5
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 1.9e-82 309.7 238 73.9
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 1.9e-82 309.7 236 76.3
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 2.5e-82 309.3 229 75.1
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 3.3e-82 308.9 222 79.3
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 3.3e-82 308.9 217 78.8
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 4.3e-82 308.5 238 73.9
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 5.6e-82 308.1 236 73.3
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 5.6e-82 308.1 209 80.4
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 7.3e-82 307.8 233 74.2
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 7.3e-82 307.8 230 77.0
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 1.3e-81 307.0 238 73.9
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.3e-81 307.0 238 74.4
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 1.3e-81 307.0 236 73.7
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 1.6e-81 306.6 237 73.8
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.1e-81 306.2 232 75.0
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 2.8e-81 305.8 231 71.4
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 2.8e-81 305.8 233 74.2
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 3.6e-81 305.4 214 78.0
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 3.6e-81 305.4 232 74.6
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 3.6e-81 305.4 232 74.6
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 4.8e-81 305.1 239 75.3
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 4.8e-81 305.1 232 76.3
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 1.8e-80 303.1 233 76.0
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 2.4e-80 302.8 204 81.4
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 2.4e-80 302.8 229 76.0
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 4.0e-80 302.0 231 72.3
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 5.3e-80 301.6 231 74.9
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 5.3e-80 301.6 238 71.0
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 6.9e-80 301.2 284 63.7
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 9.0e-80 300.8 214 76.6
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 9.0e-80 300.8 218 76.6
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 1.2e-79 300.4 231 71.9
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 1.2e-79 300.4 214 77.6
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.5e-79 300.1 262 66.8
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 1.5e-79 300.1 237 73.0
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.5e-79 300.1 208 80.3
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.6e-79 299.3 215 77.2
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 2.6e-79 299.3 208 80.3
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 3.4e-79 298.9 231 71.0
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 5.8e-79 298.1 225 74.2
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 7.6e-79 297.7 231 71.0
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 7.6e-79 297.7 232 74.1
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 9.9e-79 297.4 209 77.5
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.7e-78 296.6 274 63.9
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 2.2e-78 296.2 214 75.2
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 2.9e-78 295.8 204 80.9
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.9e-78 295.8 272 64.0
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 6.4e-78 294.7 230 73.5
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.4e-77 293.5 251 68.9
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 1.4e-77 293.5 231 69.7
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 2.4e-77 292.7 230 70.4
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 3.2e-77 292.4 231 69.7
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 3.2e-77 292.4 176 90.3
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 1.2e-76 290.4 229 70.3
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 2.1e-76 289.7 230 69.6
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 2.7e-76 289.3 229 69.9
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 2.7e-76 289.3 229 69.9
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 2.7e-76 289.3 229 69.9
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 4.6e-76 288.5 229 69.9
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 6.0e-76 288.1 233 71.7
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 6.0e-76 288.1 214 72.4
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 7.9e-76 287.7 233 70.0
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 1.3e-75 287.0 227 70.5
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 2.3e-75 286.2 232 68.1
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 3.0e-75 285.8 236 69.9
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 3.0e-75 285.8 239 70.3
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 6.7e-75 284.6 223 70.9
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 1.1e-74 283.9 193 80.3
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 1.1e-74 283.9 269 64.3
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 5.6e-74 281.6 236 69.9
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 9.6e-74 280.8 174 86.2
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 1.3e-73 280.4 204 77.0
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 8.1e-73 277.7 227 68.3
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 4.0e-72 275.4 174 85.1
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 5.3e-72 275.0 174 85.1
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 2.2e-70 269.6 232 69.0
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 6.4e-70 268.1 222 68.9
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 6.0e-68 261.5 250 61.2
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 2.3e-67 259.6 231 65.4
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.5e-66 256.9 231 65.4
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 1.5e-66 256.9 210 69.5
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.3e-66 255.8 209 68.4
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 2.4e-64 249.6 227 64.3
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 5.3e-64 248.4 181 74.0
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.6e-63 246.1 151 90.1
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 7.6e-63 244.6 232 61.2
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 1.0e-62 244.2 178 73.0
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 7.1e-61 238.0 174 73.0
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 2.7e-60 236.1 229 61.6
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 8.7e-59 231.1 172 71.5
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 8.2e-57 224.6 139 89.2
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 3.8e-54 215.7 160 76.2
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.2e-53 212.6 184 62.0
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 7.9e-52 208.0 138 76.8
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 1.9e-50 203.4 178 60.7
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 7.4e-50 201.4 217 57.1
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 2.2e-49 199.9 185 62.7
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 4.1e-48 195.7 128 84.4
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 7.2e-45 184.9 182 56.6
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.1e-40 169.1 162 61.1
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 1.7e-38 163.7 161 53.4
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.4e-37 160.6 139 66.2
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 1.2e-36 157.5 175 49.1
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 1.0e-35 154.5 180 46.7
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 3.3e-34 149.4 93 79.6
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.1e-32 144.4 209 45.5
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 1.2e-31 141.0 136 62.5
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 7.7e-31 138.3 94 76.6
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 1.2e-28 131.0 89 84.3
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 4.7e-28 129.0 76 94.7
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 3.7e-25 119.4 71 91.5
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 7.0e-24 115.2 181 42.5
AL2G21940 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.7e-23 113.2 106 57.5
FAN19G0592 Fragaria x ananassa HOM05D003590 ORTHO05D004290 5.9e-23 112.1 109 58.7
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.7e-23 111.7 139 51.8
AL2G21120 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 8.5e-22 108.2 107 57.9
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 1.6e-20 104.0 70 80.0
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.0e-18 97.1 76 75.0
EL10Ac4g08485 Beta vulgaris HOM05D003590 ORTHO05D004290 1.3e-14 84.3 60 70.0
EL10Ac4g08487 Beta vulgaris HOM05D003590 ORTHO05D004290 1.3e-14 84.3 60 70.0
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 1.7e-14 84.0 66 74.2
Ca_29066_v3 Cicer arietinum L. HOM05D003590 ORTHO05D147848 6.5e-14 82.0 174 28.2
CANSAT11G1461 Cannabis sativa HOM05D003590 ORTHO05D004290 4.9e-09 65.9 132 40.9


User provided reference genes

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