Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 6.9e-180 634.0 361 100.0
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.5e-126 456.8 368 72.3
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.5e-126 456.8 368 72.3
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.0e-119 432.6 367 69.2
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.7e-117 425.6 365 71.8
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.8e-116 423.3 363 66.4
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 9.2e-116 421.0 362 71.3
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 8.6e-114 414.5 368 69.8
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 6.8e-111 404.8 361 68.4
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.0e-106 391.0 367 65.4
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.3e-105 386.0 363 62.8
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 9.5e-105 384.4 350 66.0
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.3e-101 374.0 363 63.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.4e-92 344.0 398 54.8
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.4e-92 343.2 377 56.0
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 5.4e-92 342.0 376 59.0
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 5.4e-92 342.0 361 57.9
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.0e-90 337.8 385 53.5
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.3e-89 332.4 379 57.0
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 5.6e-89 332.0 384 57.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 3.6e-88 329.3 398 55.8
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.4e-87 326.6 385 56.9
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 5.8e-86 322.0 383 51.7
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.1e-84 317.8 377 55.2
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.4e-84 317.4 382 55.5
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.6e-83 313.9 389 54.2
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 4.6e-83 312.4 379 53.6
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 4.6e-83 312.4 383 53.8
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.6e-83 312.4 383 53.8
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 4.6e-83 312.4 380 55.3
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.3e-82 310.8 383 53.5
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.3e-82 310.1 383 54.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.9e-82 309.3 391 54.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.9e-82 309.3 376 51.9
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 5.1e-82 308.9 380 54.7
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 8.7e-82 308.1 380 55.8
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.9e-81 307.0 382 51.8
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.9e-81 307.0 393 52.2
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.5e-81 306.6 385 52.7
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 3.3e-81 306.2 401 51.6
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.3e-80 304.3 390 50.5
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.6e-80 303.9 396 54.0
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 2.8e-80 303.1 377 54.6
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.8e-80 303.1 380 51.8
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 4.8e-80 302.4 395 49.6
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 8.1e-80 301.6 404 48.3
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.1e-79 301.2 376 52.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.8e-79 300.4 383 54.0
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.3e-79 298.9 331 57.4
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 5.3e-79 298.9 383 53.8
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 9.0e-79 298.1 381 52.0
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.6e-78 296.6 383 52.0
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.6e-78 295.0 396 52.0
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.3e-77 294.3 392 52.0
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.9e-77 292.4 394 51.8
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.4e-76 290.8 391 49.1
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.2e-76 289.3 383 49.3
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 5.4e-76 288.9 389 50.9
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.6e-75 287.3 382 49.2
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.6e-75 287.3 382 49.2
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 2.7e-75 286.6 365 49.9
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 2.7e-75 286.6 365 49.9
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.3e-74 284.3 352 51.7
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.8e-74 283.9 381 50.1
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.8e-74 283.9 389 51.2
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.5e-73 280.8 382 51.0
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.5e-73 280.0 385 53.5
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 5.6e-73 278.9 361 50.7
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 7.4e-73 278.5 388 49.5
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 9.6e-73 278.1 380 55.3
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 8.1e-72 275.0 383 52.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.1e-71 274.6 382 45.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.8e-71 273.9 395 51.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 9.0e-71 271.6 374 50.5
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 9.9e-70 268.1 352 50.6
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 2.2e-69 266.9 383 48.6
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 3.8e-69 266.2 381 50.4
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 2.4e-68 263.5 383 44.6
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 7.1e-68 261.9 386 47.7
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 7.9e-67 258.5 349 51.3
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.8e-66 257.3 369 51.2
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 6.7e-66 255.4 356 51.1
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 8.7e-66 255.0 369 51.8
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.9e-65 253.8 373 45.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 3.3e-65 253.1 367 48.8
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 7.4e-65 251.9 386 44.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.8e-64 249.2 306 51.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.8e-63 247.3 327 52.9
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.8e-62 242.3 367 50.4
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.8e-62 242.3 367 50.4
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.9e-61 240.0 327 51.4
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 4.9e-61 239.2 306 50.3
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 8.4e-61 238.4 367 42.0
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.4e-60 237.7 327 51.1
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.2e-60 236.5 307 56.0
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.3e-58 231.1 257 50.2
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.7e-58 228.8 370 48.4
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.7e-56 223.0 321 51.7
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.0e-53 214.9 306 52.3
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.5e-53 212.2 367 45.8
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 8.5e-53 211.8 379 44.9
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.7e-51 206.8 378 41.8
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 3.6e-51 206.5 339 49.0
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 4.6e-51 206.1 370 44.9
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.0e-50 204.9 370 44.6
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.4e-47 194.5 362 45.6
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.8e-47 194.1 371 42.9
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.8e-47 194.1 377 44.6
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.4e-47 193.7 367 45.5
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 4.1e-47 193.0 392 38.5
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.3e-45 188.0 367 38.7
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 5.0e-45 186.0 302 47.4
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 1.1e-44 184.9 339 45.4
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.6e-43 181.0 382 39.0
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 3.0e-42 176.8 339 44.2
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.5e-41 174.5 376 37.0
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.2e-40 170.6 225 56.9
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 3.1e-39 166.8 331 40.2
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 9.1e-39 165.2 376 37.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 2.6e-38 163.7 380 37.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.4e-38 163.3 378 37.3
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.8e-37 159.8 361 40.7
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.4e-36 157.9 378 37.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.9e-36 157.5 284 48.2
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.0e-34 151.8 371 41.8
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.0e-34 150.2 377 36.3
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.8e-32 142.9 177 58.2
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.3e-31 139.4 376 34.0
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 5.9e-30 136.0 340 35.6
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.5e-29 132.5 179 46.9
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.6e-27 126.7 303 35.0
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 4.7e-27 126.3 307 34.9
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 6.1e-27 125.9 365 36.7
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.0e-26 125.2 150 59.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-26 124.8 303 34.7
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.8e-26 124.4 315 34.6
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 5.2e-26 122.9 339 34.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.2e-25 121.7 384 32.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.2e-24 117.5 307 34.9
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 4.8e-24 116.3 353 31.2
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 9.1e-23 112.1 300 33.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-22 111.7 298 34.6
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 3.8e-21 106.7 307 33.6
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 3.8e-21 106.7 307 33.6
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.5e-20 104.8 315 33.3
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-17 94.7 299 31.4
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.8e-15 87.8 303 33.3
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.2e-14 85.1 372 29.8
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-14 84.7 304 33.2
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.3e-13 81.6 349 28.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 4.2e-12 76.6 317 31.2
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 9.5e-12 75.5 300 30.0
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 2.6e-09 67.4 228 29.4
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.3e-08 65.1 112 42.9
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 8.3e-08 62.4 113 42.5
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.7e-06 57.4 227 28.6
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.7e-06 57.4 227 28.6


User provided reference genes

Program Settings