Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 2.2e-208 728.8 380 100.0
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 2.9e-152 542.3 385 74.8
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.1e-146 522.3 383 75.2
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 2.4e-143 512.7 384 71.9
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.2e-142 510.4 396 71.7
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 1.0e-133 480.7 385 69.4
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 5.1e-125 451.8 361 70.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.3e-122 441.8 383 64.8
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.9e-119 433.3 386 64.2
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 6.0e-118 428.3 381 62.2
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.4e-114 417.2 415 58.1
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.4e-114 416.4 415 57.8
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.5e-113 412.1 393 60.8
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 5.0e-112 408.7 386 61.1
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 3.6e-110 402.5 385 58.7
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.0e-109 401.0 410 57.6
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.3e-109 399.8 384 58.3
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 3.0e-109 399.4 386 59.8
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 4.8e-107 392.1 416 56.0
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 4.8e-107 392.1 383 58.7
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 4.1e-106 389.0 385 58.4
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 3.8e-104 382.5 384 57.6
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 5.0e-104 382.1 404 55.2
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 8.5e-104 381.3 382 58.9
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 7.2e-103 378.3 395 57.5
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.2e-102 377.5 386 57.8
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.4e-101 374.0 401 55.9
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 2.0e-100 370.2 397 54.2
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.6e-100 369.8 400 55.2
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 2.6e-100 369.8 400 55.5
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 3.7e-99 365.9 398 55.8
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.1e-98 364.4 397 55.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.8e-98 363.6 402 55.7
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 4.5e-97 359.0 385 55.6
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.9e-96 356.3 377 56.8
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.0e-96 355.5 405 55.1
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.5e-95 353.2 357 57.7
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 2.5e-95 353.2 390 53.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.2e-95 352.8 349 57.3
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 3.6e-94 349.4 348 60.1
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 6.1e-94 348.6 379 56.5
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 2.3e-93 346.7 421 52.5
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 2.0e-92 343.6 406 53.0
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.7e-91 340.5 414 52.2
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 4.8e-91 339.0 425 49.4
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.3e-90 335.5 414 50.5
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 7.0e-90 335.1 396 53.5
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 9.1e-90 334.7 385 51.7
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 2.0e-89 333.6 398 50.8
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 2.6e-89 333.2 394 52.8
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.5e-89 332.8 416 50.0
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 4.5e-89 332.4 389 52.2
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 5.0e-88 328.9 437 47.8
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 6.5e-88 328.6 386 54.1
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 8.5e-88 328.2 399 51.6
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.1e-87 327.8 384 51.0
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 1.5e-87 327.4 399 51.6
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 9.4e-87 324.7 420 49.0
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 9.4e-87 324.7 385 49.6
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 6.1e-86 322.0 393 51.4
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 2.3e-85 320.1 347 55.3
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 6.7e-85 318.5 341 55.7
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 2.0e-84 317.0 405 49.6
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 2.6e-84 316.6 345 56.8
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 2.6e-84 316.6 438 49.1
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 5.7e-84 315.5 309 58.6
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 5.7e-84 315.5 394 49.7
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 4.1e-82 309.3 245 69.0
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.3e-80 304.3 352 53.1
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.2e-80 303.5 217 73.3
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 8.5e-80 301.6 218 74.3
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 8.5e-80 301.6 385 49.1
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.5e-79 300.8 393 49.1
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 7.2e-79 298.5 351 51.0
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 6.1e-78 295.4 369 50.7
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.4e-77 294.3 349 49.9
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 5.2e-77 292.4 400 45.5
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.6e-76 290.0 359 48.7
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.3e-75 285.0 439 44.2
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 8.3e-75 285.0 252 62.3
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.4e-74 284.3 387 47.0
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 5.4e-74 282.3 293 54.6
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.6e-73 280.8 382 45.8
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 2.9e-72 276.6 441 44.0
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.0e-69 268.1 388 44.8
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.4e-69 267.7 390 44.1
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 4.0e-69 266.2 296 51.4
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 4.0e-69 266.2 330 49.1
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 4.0e-69 266.2 389 45.5
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 6.8e-69 265.4 296 52.0
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.0e-68 263.8 250 58.4
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 9.8e-68 261.5 437 41.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.0e-66 255.4 378 43.7
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.3e-64 251.1 184 73.9
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.5e-63 247.7 347 44.7
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.3e-63 246.5 403 42.4
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.8e-61 240.7 191 68.1
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.8e-61 240.7 253 54.9
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.3e-61 240.4 373 44.5
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.2e-60 238.0 273 52.7
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.0e-60 237.3 369 45.3
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 2.6e-60 236.9 384 43.2
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 4.4e-60 236.1 249 55.0
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 4.4e-60 236.1 249 55.0
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 4.4e-60 236.1 249 55.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 5.8e-60 235.7 254 55.1
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 7.5e-60 235.3 337 45.4
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.3e-59 234.6 249 55.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.2e-59 233.8 255 55.3
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.2e-58 228.4 191 64.9
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 2.0e-57 227.3 280 51.8
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.9e-56 223.0 182 65.9
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 2.1e-54 217.2 349 42.7
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.8e-53 214.2 337 39.5
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 7.5e-52 208.8 213 56.3
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 6.4e-51 205.7 237 47.7
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.1e-50 204.9 278 47.5
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.4e-50 204.5 413 37.0
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 2.7e-49 200.3 340 40.3
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.7e-48 197.6 346 40.8
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 9.5e-47 191.8 380 39.5
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 8.1e-46 188.7 192 57.3
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 9.9e-44 181.8 246 43.9
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 6.6e-40 169.1 273 44.7
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.5e-39 167.9 244 46.7
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 6.2e-38 162.5 170 54.7
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 4.9e-35 152.9 85 87.1
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.1e-34 151.8 121 65.3
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 4.2e-34 149.8 187 48.1
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 1.3e-30 138.3 204 43.6
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 6.2e-30 136.0 214 44.9
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.4e-29 134.0 137 51.8
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 9.0e-29 132.1 94 74.5
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 2.4e-26 124.0 81 72.8
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 3.2e-26 123.6 114 60.5
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 9.3e-26 122.1 117 59.0
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 6.0e-25 119.4 123 56.1
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 6.0e-25 119.4 123 56.1
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 2.3e-24 117.5 84 70.2
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 2.3e-24 117.5 222 39.2
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 6.2e-22 109.4 240 34.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.8e-19 100.1 86 62.8
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.4e-18 98.2 213 32.9
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.4e-15 85.9 49 79.6
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 8.1e-14 82.4 313 26.5
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.2e-12 78.6 55 65.5
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.3e-11 75.1 98 43.9
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 2.9e-11 73.9 83 47.0
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 4.9e-11 73.2 75 49.3
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 7.1e-10 69.3 114 38.6
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 2.1e-09 67.8 97 38.1
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 9.6e-07 58.9 168 29.8


User provided reference genes

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