Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.3e-83 310.5 150 100.0
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.8e-81 303.9 150 98.7
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.4e-79 297.4 150 97.3
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.3e-60 235.7 170 75.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.1e-51 206.8 170 67.6
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.9e-47 192.2 170 64.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 2.1e-45 186.0 170 61.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 5.1e-44 181.4 170 58.8
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.3e-43 178.7 170 58.2
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.6e-42 175.3 168 57.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.6e-42 175.3 170 58.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.9e-41 171.0 167 56.3
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 9.0e-41 170.6 166 58.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.0e-40 169.5 169 55.6
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 7.6e-40 167.5 169 55.6
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.7e-39 166.4 166 56.0
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 3.8e-39 165.2 170 54.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.8e-39 165.2 170 55.3
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.8e-39 165.2 170 55.9
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 4.9e-39 164.9 172 52.3
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 8.4e-39 164.1 167 55.7
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 8.4e-39 164.1 167 56.3
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.1e-38 163.7 170 55.3
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.9e-38 162.9 167 55.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 4.2e-38 161.8 167 53.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 9.3e-38 160.6 167 55.1
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 3.5e-37 158.7 167 54.5
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.5e-37 158.7 165 54.5
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 3.5e-37 158.7 165 54.5
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 6.0e-37 157.9 167 53.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.0e-37 157.9 165 54.5
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 7.9e-37 157.5 170 52.4
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.0e-36 157.1 169 53.3
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.0e-36 157.1 167 53.3
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-36 156.8 170 54.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.8e-36 156.4 167 52.7
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.3e-36 156.0 170 53.5
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.3e-36 156.0 170 51.8
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 3.0e-36 155.6 170 51.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.7e-36 154.5 170 54.1
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 6.7e-36 154.5 169 53.8
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.1e-35 153.7 165 54.5
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.5e-35 153.3 170 53.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 1.5e-35 153.3 167 52.1
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.9e-35 152.9 166 52.4
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.5e-35 152.5 166 53.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.3e-35 152.1 165 52.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 7.4e-35 151.0 173 52.0
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 7.4e-35 151.0 173 52.0
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 7.4e-35 151.0 167 53.9
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.6e-35 150.6 173 52.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 9.6e-35 150.6 170 51.2
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.6e-34 149.8 164 53.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 2.1e-34 149.4 168 50.6
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.8e-34 149.1 166 53.0
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.8e-34 149.1 167 52.7
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.7e-34 148.7 166 53.0
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.8e-34 148.3 160 53.8
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 6.2e-34 147.9 167 52.1
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 6.2e-34 147.9 170 50.6
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 8.1e-34 147.5 166 52.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-33 147.1 170 52.4
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.4e-33 146.7 166 53.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.4e-33 146.7 166 51.8
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 1.8e-33 146.4 167 52.1
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 6.9e-33 144.4 170 50.6
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.2e-32 143.7 170 51.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.4e-32 142.1 166 51.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.5e-32 141.7 166 51.2
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 5.8e-32 141.4 168 48.8
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.9e-31 139.0 168 51.2
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 8.4e-31 137.5 172 45.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.1e-30 137.1 165 50.9
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.4e-30 136.7 166 49.4
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 7.1e-30 134.4 171 46.8
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 7.1e-30 134.4 165 50.9
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.2e-29 133.7 166 47.6
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.6e-29 133.3 166 47.6
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.6e-29 133.3 166 48.8
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.7e-29 132.5 167 49.1
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.7e-29 132.5 167 49.1
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 3.5e-29 132.1 167 48.5
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 3.5e-29 132.1 167 49.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 3.5e-29 132.1 158 51.3
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.6e-29 131.7 166 47.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 4.6e-29 131.7 166 46.4
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 7.9e-29 131.0 167 49.1
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.0e-28 130.6 168 48.8
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.8e-28 129.8 171 49.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 2.3e-28 129.4 174 48.3
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 3.0e-28 129.0 103 64.1
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 3.0e-28 129.0 166 47.6
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.0e-28 129.0 166 47.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.9e-28 128.6 157 50.3
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.9e-28 128.6 167 47.9
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 3.9e-28 128.6 167 47.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.9e-28 128.6 168 46.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.1e-28 128.3 166 48.8
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.7e-28 127.5 166 47.0
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 8.7e-28 127.5 167 47.3
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.1e-27 127.1 166 48.8
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 2.5e-27 125.9 164 47.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.5e-27 125.9 166 47.6
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 3.3e-27 125.6 166 48.8
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.1e-26 122.9 167 44.3
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.8e-26 121.7 170 45.3
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 6.2e-26 121.3 165 46.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 8.2e-26 120.9 166 48.2
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.4e-25 119.4 170 45.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 9.0e-25 117.5 98 64.3
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.8e-24 114.8 127 53.5
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 7.6e-24 114.4 99 61.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.2e-23 112.8 153 47.7
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 8.4e-23 110.9 168 43.5
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-22 110.5 166 44.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.1e-22 110.5 166 44.6
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.9e-22 109.8 164 42.7
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.5e-22 108.2 145 46.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.5e-21 105.5 99 59.6
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 4.6e-21 105.1 167 43.7
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 7.9e-21 104.4 99 58.6
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.0e-20 104.0 166 41.0
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 8.7e-20 100.9 162 42.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.9e-19 99.8 164 42.7
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.7e-19 98.2 87 59.8
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.7e-18 95.5 124 45.2
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.6e-16 89.4 62 71.0
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.5e-16 88.6 67 67.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.3e-15 87.0 157 40.1
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.3e-15 87.0 159 38.4
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.2e-15 86.3 65 73.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.9e-15 85.9 68 63.2
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.1e-14 84.0 63 74.6
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.1e-14 84.0 162 38.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-14 83.6 130 43.8
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-13 80.1 112 45.5
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 4.6e-13 78.6 119 44.5
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 3.9e-12 75.5 86 51.2
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.1e-12 75.1 122 37.7
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 6.7e-12 74.7 135 39.3
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 8.8e-12 74.3 128 39.1
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.5e-11 73.6 115 38.3
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.7e-11 71.6 62 59.7
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.7e-11 71.6 136 33.8
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 5.7e-11 71.6 168 35.1
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-10 70.5 58 62.1
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.3e-10 70.5 58 62.1
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 3.7e-10 68.9 126 38.9
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.2e-10 67.8 54 63.0
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.1e-09 67.4 157 38.2
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.4e-09 66.2 101 40.6
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 6.9e-09 64.7 81 44.4
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-08 63.9 90 44.4
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.0e-08 63.2 47 57.4
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.4e-08 62.4 58 48.3
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 4.5e-08 62.0 117 36.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.4e-06 57.0 60 50.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.2e-06 54.7 42 69.0


User provided reference genes

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