Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.4e-164 582.8 286 100.0
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-160 569.3 289 97.2
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-160 569.3 289 97.2
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.9e-134 481.1 291 81.8
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.0e-130 470.3 290 79.3
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.4e-129 464.9 286 80.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 7.5e-129 464.2 289 78.2
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.7e-128 461.8 288 78.1
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.5e-126 455.3 288 77.8
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.5e-126 454.9 291 75.3
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.0e-125 453.8 292 75.0
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.0e-125 453.8 292 75.0
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.3e-125 453.4 290 77.9
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.3e-125 453.4 292 75.0
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-123 446.0 291 75.3
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 2.8e-123 445.7 291 74.6
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.8e-122 443.0 289 75.8
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 2.3e-122 442.6 289 73.7
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 5.2e-122 441.4 291 73.5
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.2e-121 440.3 291 74.6
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.2e-121 440.3 286 73.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 2.0e-121 439.5 291 74.2
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.4e-121 438.3 288 74.7
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 9.8e-121 437.2 328 69.5
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.3e-120 436.8 294 73.8
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.7e-120 436.4 291 73.2
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.7e-120 436.4 291 74.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.9e-120 434.9 291 73.2
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.9e-120 434.9 291 73.5
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 4.9e-120 434.9 290 75.2
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 8.3e-120 434.1 292 72.6
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.1e-119 433.7 291 73.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.1e-119 433.7 290 74.8
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 3.2e-119 432.2 285 74.4
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 9.2e-119 430.6 285 74.4
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.2e-118 430.3 285 74.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.2e-118 430.3 285 74.7
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.0e-118 429.5 283 72.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.7e-118 429.1 301 71.8
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 2.7e-118 429.1 290 72.4
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 3.5e-118 428.7 286 72.7
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 3.5e-118 428.7 283 74.9
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.5e-118 428.7 291 72.5
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 5.9e-118 427.9 286 73.4
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 5.9e-118 427.9 291 71.8
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 5.9e-118 427.9 290 73.4
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.0e-117 427.2 292 73.3
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.7e-117 426.4 288 71.9
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.3e-117 426.0 286 73.1
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 3.0e-117 425.6 289 72.0
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.9e-117 425.2 296 71.6
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 5.0e-117 424.9 285 73.0
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 8.6e-117 424.1 285 72.3
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 8.6e-117 424.1 286 71.7
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.3e-116 422.2 289 72.3
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 5.6e-116 421.4 285 71.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 5.6e-116 421.4 293 72.0
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 9.5e-116 420.6 291 71.1
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 1.6e-115 419.9 286 71.0
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 2.1e-115 419.5 291 71.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 2.8e-115 419.1 292 72.6
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 2.8e-115 419.1 291 70.8
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 4.7e-115 418.3 288 71.5
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.7e-115 418.3 284 71.8
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 6.2e-115 417.9 291 70.8
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 8.0e-115 417.5 282 73.0
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.8e-114 416.4 286 71.0
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.1e-114 415.6 288 71.9
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 4.0e-114 415.2 323 65.6
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 5.2e-114 414.8 286 72.0
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 6.8e-114 414.5 286 70.6
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 2.0e-113 412.9 288 70.1
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 2.6e-113 412.5 287 70.7
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 3.4e-113 412.1 285 70.5
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 7.5e-113 411.0 285 70.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 9.8e-113 410.6 288 69.8
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.2e-112 409.5 300 69.0
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.9e-112 409.1 284 71.1
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 3.7e-112 408.7 287 69.7
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 4.9e-112 408.3 288 70.8
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.1e-111 407.1 288 70.1
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.9e-111 406.4 243 81.1
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 3.2e-111 405.6 287 70.0
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 7.0e-111 404.4 287 70.4
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.2e-110 403.7 288 71.5
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.7e-110 402.5 285 71.2
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.5e-110 402.1 287 68.3
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 6.0e-110 401.4 287 70.0
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 7.8e-110 401.0 287 69.3
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.3e-109 400.2 291 67.4
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 5.0e-109 398.3 291 68.4
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.1e-108 397.1 259 73.7
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 7.3e-108 394.4 290 69.0
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.2e-107 393.7 254 76.8
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.1e-107 392.9 323 63.2
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.1e-107 392.9 323 63.2
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.1e-106 390.6 303 65.7
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.8e-106 389.8 287 67.6
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 5.2e-106 388.3 294 68.4
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.7e-104 383.3 254 74.8
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 9.2e-103 377.5 288 66.7
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.7e-102 375.9 253 72.7
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 3.5e-102 375.6 254 71.7
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.3e-101 373.6 288 65.6
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.3e-101 372.9 279 65.2
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 7.3e-100 367.9 252 73.0
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.7e-99 365.2 278 65.8
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.6e-97 359.4 232 75.9
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 8.6e-93 344.4 289 60.9
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 3.1e-90 335.9 286 60.1
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.5e-89 333.6 241 68.9
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.3e-88 330.5 208 77.4
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.6e-86 323.6 286 59.8
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 2.7e-86 322.8 258 63.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 6.2e-83 311.6 228 71.1
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.2e-83 311.6 283 57.2
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.4e-82 310.5 291 54.3
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.7e-80 303.5 280 53.6
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.4e-79 300.4 289 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 4.5e-73 278.9 237 59.5
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 5.8e-65 251.9 169 72.2
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 5.8e-65 251.9 189 66.7
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 4.2e-55 219.2 303 47.2
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 2.5e-47 193.4 260 42.3
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 2.0e-44 183.7 130 67.7
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.8e-42 177.2 153 60.8
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 5.9e-41 172.2 276 36.2
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 6.7e-37 158.7 148 56.1
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-35 153.7 150 54.7
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.4e-34 151.0 148 54.7
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.5e-31 141.0 135 55.6
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.5e-28 128.6 262 31.3
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.7e-27 127.5 113 54.9
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 8.2e-27 125.2 162 45.7
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 1.1e-26 124.8 94 68.1
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 9.1e-26 121.7 81 72.8
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.7e-25 118.6 64 84.4
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.3e-24 117.9 368 26.6
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 9.4e-23 111.7 100 55.0
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 2.3e-21 107.1 86 66.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 5.2e-21 105.9 70 75.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.2e-20 104.8 65 80.0
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 7.5e-20 102.1 66 68.2
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.5e-15 87.8 60 70.0
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 5.5e-15 85.9 144 40.3
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.6e-14 83.2 209 33.0
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 6.1e-14 82.4 92 48.9
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 8.0e-14 82.0 109 45.9
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.4e-13 81.3 90 47.8
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.0e-13 79.7 86 50.0
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.0e-13 79.7 86 50.0
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.5e-12 77.8 56 66.1
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 1.7e-11 74.3 122 41.0
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.8e-11 73.6 61 57.4
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.7e-11 73.2 185 29.7
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.3e-11 72.4 46 71.7
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.3e-11 72.4 46 71.7
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.1e-10 70.1 46 67.4
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.0e-10 68.9 48 66.7
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.7e-08 64.3 42 73.8
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 6.6e-08 62.4 47 63.8
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 2.5e-07 60.5 47 61.7


User provided reference genes

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