Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 0.0e+00 1122.8 567 100.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 4.6e-247 857.8 573 78.9
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.1e-240 836.6 574 76.1
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.6e-239 832.8 581 75.2
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 5.3e-235 817.8 559 76.9
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 7.7e-226 787.3 564 74.6
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 4.5e-218 761.5 573 71.9
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 6.1e-215 751.1 578 70.6
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.4e-211 739.2 578 67.6
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 9.1e-211 737.3 578 69.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.9e-210 734.6 577 69.5
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.9e-210 734.6 577 69.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-209 732.6 577 69.0
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 5.0e-209 731.5 592 67.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.2e-208 728.8 570 67.5
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.7e-207 725.7 584 67.1
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.9e-206 721.8 574 67.9
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.8e-203 713.0 548 69.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.6e-202 709.9 548 69.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 7.7e-202 707.6 569 66.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.7e-202 707.6 569 66.3
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-201 706.1 548 69.2
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.2e-201 706.1 583 64.2
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 5.0e-201 704.9 571 67.6
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.5e-200 703.4 570 66.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.5e-200 702.6 576 65.8
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 4.2e-200 701.8 579 66.0
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.7e-199 698.4 569 65.7
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 4.7e-199 698.4 565 66.0
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 8.0e-199 697.6 567 66.5
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 8.0e-199 697.6 585 65.0
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.2e-197 693.7 539 68.5
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.5e-197 693.3 564 65.8
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.4e-197 692.2 577 65.9
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-196 689.5 570 65.1
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.2e-196 689.5 563 65.5
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.3e-196 688.0 573 64.2
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 6.5e-193 677.9 562 65.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.9e-192 676.4 574 63.4
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.2e-192 674.5 540 66.7
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 9.4e-192 674.1 590 63.1
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.2e-191 673.7 560 64.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 3.6e-191 672.2 573 63.0
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 6.8e-190 667.9 577 63.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.5e-189 666.8 578 63.5
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 2.6e-189 666.0 576 63.0
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 4.1e-187 658.7 553 63.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 9.1e-187 657.5 560 65.9
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 3.5e-186 655.6 568 62.3
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.9e-185 652.5 558 64.5
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.1e-184 650.6 575 61.9
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 9.5e-184 647.5 582 62.5
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 5.2e-182 641.7 603 60.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 6.8e-182 641.3 557 62.7
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 9.8e-181 637.5 565 61.9
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 6.3e-180 634.8 582 60.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.1e-179 634.0 559 62.4
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.9e-177 625.9 559 62.1
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 8.6e-177 624.4 558 61.3
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 8.6e-177 624.4 578 61.8
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.5e-176 622.9 581 61.6
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.1e-174 615.9 477 68.3
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 3.1e-174 615.9 557 60.3
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 6.8e-174 614.8 567 60.0
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.3e-172 610.5 601 57.7
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 4.9e-172 608.6 561 59.7
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.5e-162 575.9 559 58.1
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 9.5e-160 567.8 532 59.4
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.5e-157 560.5 559 58.7
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.4e-155 553.1 610 55.2
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.6e-151 540.4 445 65.8
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.2e-151 538.5 328 82.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 8.9e-150 534.6 510 57.1
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 4.9e-148 528.9 447 64.7
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 2.1e-146 523.5 538 55.4
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 6.0e-146 521.9 538 55.2
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.8e-129 467.2 361 67.3
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 9.6e-128 461.5 531 48.4
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.1e-127 460.3 541 51.8
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 5.5e-123 445.7 387 64.3
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 3.5e-114 416.4 490 50.2
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.0e-105 386.7 425 52.5
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 5.1e-97 359.4 533 45.0
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 5.0e-92 342.8 358 58.4
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 4.1e-86 323.2 497 42.5
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.6e-85 321.2 334 59.0
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 8.8e-81 305.4 201 75.6
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.3e-73 280.8 539 36.2
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-73 280.4 504 36.7
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 5.2e-73 279.6 472 37.1
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 5.7e-72 276.2 508 36.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-71 275.0 476 37.2
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.4e-70 270.8 465 39.4
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 2.7e-69 267.3 494 35.2
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.7e-68 264.6 493 36.1
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 3.8e-68 263.5 529 38.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 9.5e-67 258.8 543 35.7
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.8e-66 257.3 480 37.7
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.0e-66 255.8 468 38.0
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 8.0e-66 255.8 509 34.8
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 8.9e-65 252.3 460 38.9
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.5e-64 251.5 474 35.9
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-64 251.5 529 35.3
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.5e-64 251.5 464 36.9
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.0e-64 251.1 485 37.7
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 7.5e-64 249.2 169 73.4
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.3e-63 245.7 497 35.8
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 3.5e-61 240.4 476 36.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.7e-60 238.0 464 36.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.9e-59 234.6 464 36.9
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-59 233.8 462 36.1
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-58 231.5 462 35.9
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 2.1e-58 231.1 474 36.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.1e-58 231.1 462 35.9
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.0e-58 229.2 460 35.0
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-57 228.4 474 36.5
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.4e-57 228.4 407 39.1
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.1e-57 227.3 510 34.3
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 6.8e-57 226.1 471 36.9
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-56 225.3 466 35.0
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-56 224.6 462 35.1
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.0e-56 224.6 470 34.3
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.8e-56 223.0 462 35.1
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-54 218.4 570 31.4
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 6.6e-52 209.5 457 34.1
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-51 208.4 556 33.5
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 4.7e-50 203.4 465 32.5
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.8e-49 201.4 413 34.1
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.2e-47 194.5 150 61.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.9e-47 194.1 413 32.9
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-46 192.2 431 33.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 6.6e-44 183.0 436 32.1
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.8e-42 177.6 217 47.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.8e-41 174.9 456 32.5
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.4e-38 165.2 208 51.9
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.1e-37 161.4 109 75.2
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.9e-35 154.8 268 40.3
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.3e-35 153.7 450 30.0
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 4.3e-35 153.7 92 81.5
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 7.3e-35 152.9 108 63.9
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-32 145.2 330 31.2
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.4e-32 144.1 305 35.4
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.1e-30 139.0 238 37.8
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-26 125.2 173 46.8
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-25 122.1 143 48.3
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 5.3e-25 120.2 148 45.9
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 6.9e-25 119.8 166 41.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 9.0e-25 119.4 167 44.9
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.2e-24 119.0 166 40.4
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 4.4e-24 117.1 80 76.2
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.4e-22 110.2 127 49.6
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.3e-22 109.4 74 78.4
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-20 104.8 145 45.5
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.1e-18 96.3 117 41.0
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.1e-17 95.9 58 77.6
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.8e-17 95.1 83 61.4
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 4.0e-17 94.0 65 63.1
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.2e-16 92.4 139 41.0
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.6e-16 91.3 139 45.3
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.7e-15 88.6 237 30.0
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 1.7e-15 88.6 59 69.5
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 2.2e-15 88.2 56 78.6
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 8.4e-15 86.3 85 52.9
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.4e-14 85.5 104 42.3
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 7.1e-14 83.2 100 53.0
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 4.6e-13 80.5 132 36.4
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.9e-12 77.4 150 35.3
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.9e-11 75.1 40 87.5
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.9e-11 75.1 106 39.6
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 7.4e-11 73.2 79 49.4
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 7.4e-11 73.2 73 53.4
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 3.7e-10 70.9 193 25.9
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.7e-10 70.9 139 34.5
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.1e-09 69.3 172 33.7
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 3.1e-09 67.8 193 31.1
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 6.9e-09 66.6 123 33.3
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 6.9e-09 66.6 173 34.7
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 9.0e-09 66.2 61 54.1
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.0e-09 66.2 46 78.3
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 5.8e-08 63.5 58 55.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.7e-07 62.0 191 28.8
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 2.5e-06 58.2 93 37.6


User provided reference genes

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