Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 0.0e+00 1471.1 1024 100.0
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 2.0e-309 1065.8 1032 81.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 6.9e-302 1040.8 1068 70.7
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.5e-300 1033.9 1026 79.5
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 7.5e-280 967.6 963 78.8
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.2e-269 933.7 1027 75.1
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 3.1e-257 892.5 1043 72.3
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.0e-257 892.1 1031 66.8
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.2e-256 890.6 1047 69.1
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.6e-253 880.2 1037 68.3
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 6.6e-252 874.8 1049 70.8
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.3e-251 872.1 938 73.0
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 7.3e-251 871.3 1053 72.6
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.4e-249 867.1 1015 68.5
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 5.2e-249 865.1 1034 66.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.5e-248 861.3 819 85.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.1e-244 848.6 1043 68.6
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.6e-244 848.2 1031 66.8
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.5e-243 846.3 1037 69.6
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 3.6e-242 842.4 1031 68.7
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.1e-241 840.9 1033 68.0
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.8e-240 835.1 921 74.2
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.5e-240 834.7 1027 63.6
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 3.2e-238 829.3 1061 67.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 5.4e-238 828.6 1030 65.7
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 3.5e-237 825.9 1112 64.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 6.0e-237 825.1 1030 65.6
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.3e-236 823.2 925 76.3
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 3.9e-236 822.4 1044 64.1
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.1e-234 816.6 1052 64.7
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.4e-233 813.9 1050 68.0
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 5.8e-232 808.5 918 71.5
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 2.2e-231 806.6 1023 63.1
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.2e-230 801.2 1046 59.4
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.7e-229 799.7 1036 67.7
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.0e-229 798.5 1036 67.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.0e-229 798.5 1043 66.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.3e-228 796.6 1002 70.0
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 8.7e-228 794.7 919 64.9
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.1e-227 794.3 1001 70.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.5e-227 793.9 847 74.5
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.9e-225 785.0 912 73.6
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 2.9e-223 779.6 874 70.9
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 6.4e-223 778.5 953 71.2
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.2e-221 774.2 930 72.0
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 3.5e-221 772.7 910 73.4
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 7.8e-221 771.5 1043 66.8
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.0e-220 769.6 1036 66.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.1e-219 767.7 1042 63.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 9.6e-219 764.6 1044 66.3
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-218 763.8 1048 66.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.6e-218 763.8 1032 66.0
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.6e-218 762.7 917 73.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.1e-217 761.1 1063 63.8
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.1e-217 761.1 893 71.4
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-217 760.8 1046 65.2
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.0e-216 756.9 914 68.1
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 7.6e-216 755.0 1053 66.8
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.6e-216 755.0 971 67.9
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 3.8e-215 752.7 1040 64.4
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.9e-214 750.4 1028 65.4
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 9.3e-214 748.0 1045 64.7
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 9.3e-214 748.0 917 71.6
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 7.9e-213 745.0 898 71.8
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 7.9e-213 745.0 1042 64.3
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.9e-212 742.7 1042 63.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 6.7e-212 741.9 900 70.8
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.5e-211 740.7 898 70.3
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 9.6e-211 738.0 1005 67.4
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.7e-210 736.1 921 71.6
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 4.8e-210 735.7 1042 63.8
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 6.2e-210 735.3 1039 65.1
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 2.4e-209 733.4 809 78.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 5.3e-209 732.3 1064 64.7
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.5e-208 729.2 901 69.9
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.7e-207 727.2 882 72.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.8e-207 726.1 893 72.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 4.9e-207 725.7 1031 64.2
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 8.4e-207 724.9 890 70.9
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 8.4e-207 724.9 889 70.5
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.1e-206 724.5 837 75.9
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 5.5e-206 722.2 850 71.6
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 7.4e-203 711.8 924 68.8
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.3e-202 711.1 1051 61.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-202 711.1 903 68.4
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.1e-201 708.0 904 69.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 4.0e-201 706.1 901 69.9
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 5.8e-200 702.2 887 69.6
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 7.6e-200 701.8 1027 63.5
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.2e-199 700.3 916 66.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 6.5e-199 698.7 1052 56.9
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 7.1e-198 695.3 892 68.6
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.2e-197 694.5 878 71.4
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 3.5e-197 693.0 839 71.5
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 7.4e-195 685.3 913 67.4
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.7e-194 682.9 1020 62.6
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 8.2e-194 681.8 769 74.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 8.2e-194 681.8 887 69.1
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 9.0e-193 678.3 1026 61.6
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.9e-192 675.6 883 69.2
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.3e-191 674.5 895 68.7
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.0e-191 672.5 895 68.8
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 8.5e-191 671.8 902 67.8
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.9e-190 670.6 896 68.3
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 9.4e-190 668.3 896 69.1
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.7e-189 666.8 1028 62.5
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 4.6e-189 666.0 895 68.0
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 7.9e-189 665.2 1038 60.0
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.9e-188 662.9 902 59.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 8.8e-188 661.8 841 68.6
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.1e-187 661.4 906 64.7
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.0e-187 660.6 892 66.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 5.7e-187 659.1 895 68.3
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.2e-183 647.1 1009 60.0
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.9e-182 644.0 1012 53.3
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 5.5e-182 642.5 915 62.1
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.3e-180 637.1 830 69.3
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 8.8e-180 635.2 830 71.4
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.3e-179 633.3 972 59.6
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.7e-173 612.8 919 65.2
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 7.4e-171 605.5 892 58.7
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 7.0e-169 599.0 892 58.4
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 7.0e-169 599.0 892 58.4
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 7.0e-169 599.0 885 59.3
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.5e-168 596.7 863 68.3
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.9e-166 590.9 918 61.7
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 7.2e-166 589.0 806 63.0
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-161 575.1 889 57.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 5.4e-161 572.8 791 65.0
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.5e-160 570.1 929 52.6
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.2e-159 567.4 973 52.7
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.5e-155 554.7 652 85.1
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.0e-155 554.3 899 56.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.6e-155 553.9 741 63.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-153 548.5 895 55.8
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 5.4e-153 546.2 892 57.1
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.2e-152 545.0 830 64.1
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.5e-152 543.5 895 55.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 5.9e-152 542.7 689 76.1
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.6e-149 534.6 936 57.8
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 3.0e-148 530.4 781 52.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 8.3e-146 522.3 899 55.2
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-141 508.4 689 65.5
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 2.2e-138 497.7 733 63.4
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.3e-132 477.6 616 67.7
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.0e-131 474.6 915 53.7
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.2e-125 453.0 929 50.3
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.1e-121 439.5 675 60.9
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.0e-120 436.4 881 47.1
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.2e-115 422.2 801 53.7
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.0e-115 421.4 843 57.1
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.5e-110 404.4 1031 35.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.1e-109 401.4 649 72.4
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-105 389.0 341 64.5
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.4e-105 388.7 397 65.2
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.4e-105 387.9 1039 43.1
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 4.5e-99 367.1 544 48.2
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 4.9e-98 363.6 931 49.1
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.0e-91 341.7 746 49.7
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.2e-89 334.3 662 57.1
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 5.5e-89 333.6 486 48.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 6.0e-88 330.1 1303 30.0
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.7e-82 312.0 632 60.0
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 4.8e-77 293.9 307 87.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 6.5e-74 283.5 264 68.6
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 2.8e-53 214.9 229 54.6
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 5.9e-51 207.2 146 71.2
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.8e-39 167.2 284 40.1
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.6e-30 138.7 81 81.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 4.4e-30 137.9 119 60.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 4.4e-30 137.9 88 79.5
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.7e-27 128.6 108 60.2
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 8.9e-15 87.0 239 71.1
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 5.8e-14 84.3 66 68.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-12 80.1 193 35.2
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 2.1e-11 75.9 63 55.6
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 2.3e-07 62.4 206 24.8
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.0e-06 59.3 165 27.3


User provided reference genes

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