Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.5e-206 722.6 376 100.0
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.6e-179 631.7 404 82.4
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 3.3e-177 625.2 413 79.7
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.7e-177 624.4 419 79.7
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.4e-177 624.0 408 80.6
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.8e-175 619.4 403 80.4
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.5e-174 616.3 405 80.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 7.7e-174 614.0 411 78.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.7e-173 612.8 409 79.2
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.2e-173 612.5 382 81.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.9e-173 612.1 409 79.2
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.1e-172 610.1 406 78.6
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.5e-172 609.0 410 78.0
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 9.4e-172 607.1 410 78.0
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.6e-171 606.3 410 78.0
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 4.7e-171 604.7 406 78.6
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.7e-171 604.7 411 77.9
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.0e-170 603.6 406 78.3
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.0e-170 603.6 408 77.9
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.4e-170 603.2 410 77.3
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.4e-170 603.2 408 77.7
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.4e-170 603.2 410 77.6
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 3.0e-170 602.1 409 78.0
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 3.9e-170 601.7 405 78.3
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.5e-169 599.7 428 74.8
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.5e-169 599.7 406 78.1
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.0e-169 599.4 410 77.3
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.0e-169 599.4 411 77.1
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 4.4e-169 598.2 404 78.2
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 9.7e-169 597.0 412 76.7
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 2.2e-168 595.9 411 76.2
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 3.7e-168 595.1 406 77.8
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 6.3e-168 594.3 411 76.2
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 8.2e-168 594.0 405 77.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 8.2e-168 594.0 411 76.2
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 2.4e-167 592.4 414 76.3
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.0e-166 589.3 412 75.7
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 2.0e-166 589.3 416 74.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.6e-166 589.0 419 74.9
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.6e-166 589.0 410 75.6
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.6e-166 589.0 414 75.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 3.5e-166 588.6 410 76.6
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 4.5e-166 588.2 411 75.9
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.5e-166 588.2 411 77.1
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 5.9e-166 587.8 410 75.9
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 5.9e-166 587.8 407 77.1
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.3e-165 586.6 407 76.2
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.7e-165 586.3 401 76.8
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 2.9e-165 585.5 411 76.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 3.8e-165 585.1 411 76.2
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 5.0e-165 584.7 409 74.8
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.0e-165 584.7 411 76.4
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 5.0e-165 584.7 410 76.1
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.1e-164 583.6 410 75.9
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.9e-164 582.8 408 75.2
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.2e-164 582.0 415 74.0
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.2e-163 580.1 412 74.8
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.6e-163 579.7 411 74.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.7e-163 578.2 410 75.4
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 8.0e-163 577.4 419 74.9
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 8.0e-163 577.4 410 74.6
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.0e-162 575.5 411 74.7
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 6.8e-162 574.3 409 73.8
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 8.8e-162 573.9 415 72.5
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.2e-161 573.5 411 74.5
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 2.0e-161 572.8 416 73.8
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 7.5e-161 570.9 415 73.3
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 3.7e-160 568.5 423 72.3
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 3.7e-160 568.5 410 72.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 4.8e-160 568.2 409 72.1
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 6.3e-160 567.8 413 72.9
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 2.4e-159 565.8 410 72.4
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.4e-159 565.8 448 69.9
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 4.1e-159 565.1 350 84.3
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 9.1e-159 563.9 409 74.1
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.6e-158 563.1 410 72.4
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 4.5e-158 561.6 429 70.2
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 5.9e-158 561.2 410 72.9
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 7.7e-158 560.8 410 72.9
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 7.7e-158 560.8 408 74.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.3e-157 560.1 421 71.0
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.2e-157 559.3 409 73.1
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.5e-157 557.8 421 70.8
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.5e-156 556.6 410 73.7
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.5e-156 556.6 408 71.3
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.9e-156 556.2 419 72.1
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.5e-156 555.8 421 72.2
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 7.2e-156 554.3 415 73.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.1e-155 552.7 424 70.0
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 4.7e-155 551.6 415 71.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.0e-154 550.4 441 67.8
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.0e-154 548.9 410 72.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.0e-154 548.9 409 71.1
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.0e-154 548.5 441 67.3
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 6.8e-154 547.7 409 71.1
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 6.8e-154 547.7 416 70.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.0e-153 546.2 414 71.7
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 4.9e-152 541.6 387 73.6
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 4.1e-151 538.5 336 83.6
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 7.2e-148 527.7 413 68.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.1e-147 526.2 352 77.8
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.0e-146 522.3 338 79.9
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.0e-146 522.3 338 79.9
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-145 519.6 477 63.3
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-145 519.6 477 63.3
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.7e-142 509.2 315 82.9
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.6e-141 504.6 411 67.6
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 6.6e-141 504.6 340 78.2
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.7e-134 482.6 397 69.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.4e-129 465.7 415 60.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 5.8e-129 464.9 355 71.0
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 6.4e-128 461.5 406 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 1.5e-124 450.3 423 56.3
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 2.0e-121 439.9 398 63.3
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.8e-114 416.8 271 81.2
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.1e-111 407.5 331 62.5
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 3.5e-110 402.5 388 59.8
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 9.9e-105 384.4 336 65.2
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 2.2e-104 383.3 324 67.3
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 9.3e-95 351.3 341 58.1
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.4e-82 310.8 312 52.2
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 5.9e-81 305.4 402 44.5
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.7e-76 288.9 246 64.6
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.8e-74 283.9 420 41.2
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.4e-66 257.7 464 37.1
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 6.9e-66 255.4 351 42.5
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.7e-59 234.2 325 43.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.5e-57 226.5 126 86.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.8e-53 214.2 134 84.3
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.3e-53 213.8 103 99.0
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.7e-53 212.2 103 98.1
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.4e-52 209.5 315 41.0
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 6.3e-51 205.7 340 37.1
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 7.7e-49 198.7 330 36.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.8e-40 169.9 104 82.7
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.8e-35 153.7 131 65.6
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.5e-31 141.4 98 79.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.5e-31 138.7 136 60.3
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.7e-27 126.7 117 59.8
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.0e-24 118.6 58 93.1
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 3.9e-24 116.7 57 98.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 3.6e-22 110.2 101 59.4
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.2e-19 100.9 73 69.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 3.0e-16 90.5 65 70.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.9e-16 90.1 107 49.5
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 5.8e-12 76.3 101 40.6
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.9e-10 71.2 54 66.7
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.9e-10 71.2 44 70.5
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 5.4e-10 69.7 51 58.8
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.5e-09 67.0 47 66.0
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 7.8e-09 65.9 96 40.6
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.0e-08 65.5 50 58.0
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-08 63.5 42 73.8
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 6.6e-08 62.8 36 75.0
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 6.6e-08 62.8 36 75.0
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 6.6e-08 62.8 36 75.0
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 4.3e-07 60.1 167 32.3
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.2e-06 58.5 36 75.0
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-06 58.2 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-06 58.2 120 28.3
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 1.6e-06 58.2 131 31.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 2.1e-06 57.8 120 28.3
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 3.6e-06 57.0 67 49.3
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-06 57.0 120 28.3
Sopen10g026170 Solanum pennellii HOM05D000691 ORTHO05D000378 6.2e-06 56.2 252 23.0


User provided reference genes

Program Settings