Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.0e-61 240.0 127 100.0
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.0e-61 240.0 127 100.0
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 1.1e-58 229.9 127 94.5
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.8e-58 229.2 127 94.5
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 4.0e-58 228.0 126 94.4
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 6.8e-58 227.3 127 94.5
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.2e-57 226.5 127 92.9
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 1.2e-57 226.5 127 92.1
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.5e-57 226.1 127 92.1
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.5e-57 226.1 128 94.5
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 2.6e-57 225.3 127 92.9
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 3.4e-57 224.9 127 92.9
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 5.8e-57 224.2 127 91.3
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 5.8e-57 224.2 127 91.3
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 7.6e-57 223.8 128 93.0
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 7.6e-57 223.8 128 93.8
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 9.9e-57 223.4 127 92.1
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 9.9e-57 223.4 127 92.1
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 1.3e-56 223.0 127 91.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.3e-56 223.0 127 91.3
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.2e-56 222.2 127 89.8
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.2e-56 222.2 127 90.6
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.2e-56 222.2 127 90.6
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 2.2e-56 222.2 127 90.6
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 2.9e-56 221.9 124 93.5
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.9e-56 221.9 127 89.8
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 8.4e-56 220.3 127 89.8
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 8.4e-56 220.3 127 89.8
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 89.8
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 91.3
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.4e-55 219.5 127 89.8
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.4e-55 219.5 127 89.0
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 1.4e-55 219.5 127 89.8
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.9e-55 219.2 127 89.8
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 2.4e-55 218.8 127 89.8
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 3.2e-55 218.4 127 89.0
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 3.2e-55 218.4 127 89.8
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 3.2e-55 218.4 126 90.5
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 5.4e-55 217.6 127 89.0
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 5.4e-55 217.6 127 91.3
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 7.1e-55 217.2 128 90.6
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 89.0
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.6e-54 216.1 128 89.8
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 89.0
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 88.2
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 7.8e-54 213.8 129 87.6
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 1.0e-53 213.4 126 86.5
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.0e-53 213.4 123 90.2
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 87.4
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 87.4
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 2.3e-53 212.2 125 87.2
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 2.3e-53 212.2 129 86.0
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 5.1e-53 211.1 123 89.4
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 86.6
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 6.6e-53 210.7 126 84.9
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 8.7e-53 210.3 125 86.4
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 85.8
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.5e-52 209.5 124 87.9
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.9e-52 209.1 129 86.8
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 3.3e-52 208.4 126 85.7
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 4.3e-52 208.0 129 86.0
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 81.9
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 81.9
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 9.6e-52 206.8 129 84.5
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 9.6e-52 206.8 129 83.7
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 84.3
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 1.2e-51 206.5 126 84.9
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 1.6e-51 206.1 128 85.9
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 2.1e-51 205.7 129 83.7
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 4.7e-51 204.5 127 83.5
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 4.7e-51 204.5 127 85.0
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 6.2e-51 204.1 126 83.3
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 8.1e-51 203.8 124 83.1
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 8.1e-51 203.8 127 83.5
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 1.4e-50 203.0 129 82.2
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 4.0e-50 201.4 126 83.3
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 9.0e-50 200.3 122 86.1
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 9.0e-50 200.3 126 82.5
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.5e-49 199.5 127 81.9
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.0e-49 199.1 127 81.1
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 4.4e-49 198.0 124 81.5
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 80.3
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.9e-48 195.3 127 76.4
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 2.9e-48 195.3 122 83.6
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.1e-47 193.4 127 78.0
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 4.2e-47 191.4 127 75.6
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 1.6e-46 189.5 126 77.8
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 2.1e-46 189.1 131 77.9
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 6.0e-46 187.6 125 78.4
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 6.0e-46 187.6 130 76.9
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.3e-45 186.4 131 74.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.3e-45 186.4 131 76.3
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.7e-45 186.0 131 74.0
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.7e-45 186.0 122 77.0
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.7e-45 186.0 131 74.0
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.3e-45 185.7 130 76.2
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 2.3e-45 185.7 125 76.0
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.3e-45 185.7 122 77.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.1e-44 183.3 130 75.4
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.5e-44 183.0 127 74.0
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 2.5e-44 182.2 118 79.7
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.6e-44 181.0 127 76.4
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 7.3e-44 180.6 118 78.0
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.3e-43 179.9 130 73.8
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.3e-43 179.9 118 78.0
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 2.8e-43 178.7 127 76.4
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 6.2e-43 177.6 127 74.8
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 1.1e-42 176.8 127 74.0
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 3.1e-42 175.3 129 75.2
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 3.4e-41 171.8 129 74.4
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 3.4e-41 171.8 129 74.4
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 7.6e-41 170.6 147 63.3
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 7.6e-41 170.6 127 70.1
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.9e-39 166.0 127 68.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 6.0e-38 161.0 154 61.0
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.9e-36 156.0 127 66.1
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 3.3e-36 155.2 127 66.9
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.6e-35 152.9 127 63.0
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 9.0e-34 147.1 90 82.2
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 4.5e-33 144.8 88 88.6
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 4.9e-32 141.4 87 86.2
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.9e-31 139.4 127 58.3
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 2.7e-30 135.6 87 81.6
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 3.0e-29 132.1 133 56.4
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 4.8e-27 124.8 87 73.6
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 3.3e-20 102.1 120 45.0
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.1e-18 97.1 61 83.6
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.9e-15 86.3 121 40.5
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 3.2e-15 85.5 121 42.1
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 3.0e-13 79.0 46 87.0
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 5.1e-13 78.2 40 92.5
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 9.7e-12 73.9 55 70.9
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 6.9e-10 67.8 50 72.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.7e-08 63.2 31 93.5
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.9e-07 59.7 41 68.3


User provided reference genes

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