Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.5e-141 504.6 256 100.0
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.2e-140 502.3 256 99.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 2.9e-92 342.4 255 74.9
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.5e-91 337.4 218 82.6
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.4e-89 333.6 266 70.7
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.0e-89 332.4 253 73.9
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.3e-87 324.7 218 79.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.0e-80 303.1 185 84.3
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.7e-79 300.1 248 68.1
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 9.2e-78 294.3 178 84.3
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.7e-77 292.7 161 91.3
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 3.5e-77 292.4 162 87.7
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.8e-77 291.2 219 72.1
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.9e-76 288.9 212 73.6
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.1e-75 287.3 215 72.1
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.5e-75 287.0 165 87.3
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.9e-75 286.6 191 77.0
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.5e-75 286.2 216 70.4
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.3e-75 285.4 165 87.9
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.3e-75 284.6 178 79.8
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 9.5e-75 284.3 213 71.4
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.1e-74 283.1 235 67.7
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.1e-74 283.1 225 66.7
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.8e-74 282.7 221 69.2
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 4.7e-74 282.0 214 71.0
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.2e-74 281.6 225 66.2
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 6.2e-74 281.6 225 66.2
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 8.0e-74 281.2 224 66.5
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.1e-73 280.8 211 72.0
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.4e-73 280.4 165 84.8
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.4e-73 280.4 217 69.1
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.8e-73 280.0 203 72.9
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.8e-73 280.0 203 72.9
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.3e-73 279.6 161 86.3
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 2.3e-73 279.6 229 67.2
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 4.0e-73 278.9 226 65.9
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 4.0e-73 278.9 165 84.8
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.0e-73 278.9 222 67.6
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 5.2e-73 278.5 192 73.4
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 5.2e-73 278.5 173 79.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.2e-73 278.5 213 69.5
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 6.8e-73 278.1 168 83.3
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 8.9e-73 277.7 166 81.9
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 8.9e-73 277.7 168 82.1
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 8.9e-73 277.7 245 64.1
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.2e-72 277.3 161 84.5
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.2e-72 277.3 161 85.7
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.2e-72 277.3 222 66.7
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.2e-72 277.3 222 65.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.2e-72 277.3 226 65.9
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.2e-72 277.3 165 81.2
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 2.0e-72 276.6 228 65.8
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.0e-72 276.6 166 79.5
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.0e-72 276.6 214 70.6
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.6e-72 276.2 227 64.8
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 2.6e-72 276.2 160 83.1
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.6e-72 276.2 219 67.1
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.4e-72 275.8 178 77.0
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 3.4e-72 275.8 225 67.6
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.4e-72 275.8 219 65.8
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 3.4e-72 275.8 157 88.5
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 7.5e-72 274.6 223 67.3
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 7.5e-72 274.6 223 67.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 9.8e-72 274.2 225 65.8
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.7e-71 273.5 158 84.8
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.7e-71 273.5 226 67.7
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 2.2e-71 273.1 218 66.5
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.2e-71 273.1 176 77.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 3.7e-71 272.3 160 83.8
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 4.9e-71 271.9 207 67.1
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 6.4e-71 271.6 231 64.5
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.1e-70 270.8 165 81.8
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-70 270.4 157 86.6
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.4e-70 270.4 146 91.8
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.9e-70 270.0 163 82.2
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 4.1e-70 268.9 227 66.5
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 7.0e-70 268.1 246 62.2
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.2e-69 267.3 221 67.0
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.2e-69 267.3 232 63.8
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.2e-69 267.3 165 81.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.1e-69 266.5 165 81.2
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.1e-69 266.5 165 81.2
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.7e-69 266.2 214 66.8
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.7e-69 266.2 214 65.9
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.7e-69 266.2 220 63.2
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.5e-69 265.8 213 69.5
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 4.6e-69 265.4 164 79.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 6.0e-69 265.0 227 63.4
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 7.8e-69 264.6 160 80.6
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 7.8e-69 264.6 164 81.1
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 7.8e-69 264.6 227 63.4
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.0e-68 264.2 213 69.0
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.0e-68 264.2 220 63.2
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.3e-68 263.8 220 62.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 2.3e-68 263.1 160 81.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 3.9e-68 262.3 165 77.6
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 8.6e-68 261.2 221 61.5
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 5.6e-67 258.5 208 66.8
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.1e-66 256.5 216 63.4
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 3.6e-66 255.8 192 68.8
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 4.7e-66 255.4 181 71.3
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 6.2e-66 255.0 196 68.9
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 6.2e-66 255.0 190 70.5
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.4e-65 253.8 162 75.9
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 2.3e-65 253.1 213 65.7
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 3.1e-65 252.7 203 67.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 4.0e-65 252.3 139 89.2
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 6.8e-65 251.5 142 88.7
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 6.8e-65 251.5 154 82.5
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 2.0e-64 250.0 170 72.9
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 2.0e-64 250.0 155 81.3
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 2.6e-64 249.6 152 80.9
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 5.8e-64 248.4 167 73.7
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 5.8e-64 248.4 176 72.2
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.7e-63 246.9 177 71.2
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 3.7e-63 245.7 189 70.9
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.1e-62 244.2 241 59.8
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 4.1e-62 242.3 152 78.9
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 5.4e-62 241.9 214 64.0
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 7.1e-62 241.5 191 67.5
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-60 237.3 219 60.7
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.7e-60 236.9 217 60.8
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.7e-60 236.9 170 70.0
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.9e-59 233.4 139 84.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 9.5e-59 231.1 244 56.6
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 4.7e-58 228.8 127 87.4
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-57 227.6 158 68.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.1e-57 227.6 155 68.4
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.4e-57 227.3 133 85.7
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.8e-57 226.9 178 64.6
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 4.4e-56 222.2 139 77.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 4.9e-55 218.8 198 57.6
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 6.4e-55 218.4 127 81.9
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 7.8e-53 211.5 132 78.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.3e-51 204.9 170 64.1
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.4e-49 200.7 133 75.2
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 3.4e-48 196.1 194 59.3
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 5.8e-48 195.3 192 60.4
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.6e-48 194.9 219 51.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.1e-46 191.0 114 84.2
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.9e-46 190.3 119 81.5
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 7.1e-46 188.3 164 56.1
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.2e-45 187.6 118 79.7
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 7.8e-45 184.9 141 60.3
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 8.7e-44 181.4 106 84.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.3e-41 172.2 97 81.4
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.5e-40 169.1 172 57.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 2.4e-38 163.3 97 79.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-37 161.0 148 54.1
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.1e-33 147.9 77 93.5
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.1e-33 146.4 139 51.1
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 6.9e-33 145.2 77 92.2
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.2e-32 144.4 137 59.1
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 9.9e-32 141.4 74 89.2
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 3.8e-31 139.4 85 84.7
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.8e-25 120.6 94 64.9
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 9.0e-25 118.2 80 72.5
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.9e-23 113.2 92 62.0
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.1e-22 111.3 123 51.2
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.9e-22 110.5 117 56.4
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 3.7e-18 96.3 70 67.1
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 2.4e-17 93.6 47 91.5
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 5.0e-15 85.9 52 84.6
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-14 84.0 52 76.9
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 3.2e-14 83.2 42 92.9
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 4.2e-14 82.8 42 90.5
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 2.7e-13 80.1 125 44.8
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 2.8e-10 70.1 37 86.5
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.1e-09 68.2 158 39.2
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-07 60.5 32 87.5
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 3.8e-07 59.7 91 37.4
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-06 57.8 32 90.6
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-06 55.8 40 72.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 5.5e-06 55.8 40 72.5


User provided reference genes

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