Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 2367.4 1279 100.0
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1999.2 1322 81.5
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1974.9 1321 81.0
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1883.2 1341 76.6
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1822.4 1282 75.8
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1782.3 1313 74.7
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1744.2 1284 72.0
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1696.4 1319 68.7
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1691.0 1295 71.8
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1687.9 1301 69.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1687.5 1296 71.1
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1672.9 1356 69.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1666.7 1282 69.7
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1660.6 1222 71.8
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1659.4 1280 72.8
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1656.3 1278 69.4
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1654.0 1307 69.5
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1652.1 1238 70.8
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1643.2 1282 68.9
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1640.9 1281 69.1
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1636.7 1285 68.3
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1635.5 1257 69.8
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1626.3 1282 67.9
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1625.1 1288 68.1
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1623.6 1298 68.6
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1622.4 1289 68.8
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1621.3 1215 70.7
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1620.9 1282 68.0
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1617.4 1188 71.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1615.1 1352 66.8
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1614.7 1207 70.8
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1606.3 1287 69.2
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1600.5 1286 67.9
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1597.8 1289 66.0
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1592.4 1301 67.6
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1588.5 1282 67.6
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1588.2 1348 66.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1585.5 1223 68.8
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1581.6 1283 65.9
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1578.1 1314 67.0
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1576.2 1203 70.7
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1576.2 1207 69.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1573.1 1230 68.4
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1572.4 1236 69.3
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1563.5 1200 69.7
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1562.7 1247 66.9
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1561.6 1264 67.4
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1560.8 1282 65.9
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1558.5 1203 70.4
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1558.1 1302 65.9
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1550.8 1298 63.9
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1548.9 1243 68.5
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1543.9 1288 65.6
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1543.5 1292 65.6
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1541.2 1278 65.3
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1540.0 1317 64.6
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1538.1 1265 65.9
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1535.4 1283 66.1
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1532.7 1306 65.3
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1529.2 1320 64.4
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1527.7 1290 63.6
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1525.8 1306 65.0
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1525.4 1275 64.4
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1524.2 1276 64.2
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1517.3 1289 63.5
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1504.2 1294 66.0
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1500.7 1288 64.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1500.0 1265 65.2
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1499.2 1285 65.3
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1498.4 1256 64.6
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1497.6 1216 65.6
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1493.0 1265 64.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1491.9 1359 62.1
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1488.4 1285 63.9
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1448.7 1247 64.5
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1447.6 1216 66.4
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1442.9 1309 61.3
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1442.2 1313 61.8
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1439.9 1295 62.6
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1308 61.2
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1424.5 1307 62.9
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1417.5 1195 66.0
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1416.0 945 81.5
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1413.7 1313 61.7
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1412.9 1197 65.7
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1402.1 1237 64.0
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1397.1 1192 66.1
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1397.1 1192 66.1
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1385.9 1200 64.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1382.1 1193 65.1
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1360.5 1078 68.3
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1359.4 1311 57.2
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1257 59.4
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1325.8 1263 58.1
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1294.6 1167 61.3
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1287.7 1282 56.2
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1285.0 1319 55.9
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1278.8 1222 60.6
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1256.5 1250 56.7
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1255.0 1253 55.4
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1194.1 1116 61.3
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 0.0e+00 1193.3 753 81.9
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1180.2 1282 50.7
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1174.5 1341 50.3
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1132.1 1263 50.4
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1120.9 1250 51.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 4.3e-301 1038.5 1240 48.7
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 3.6e-300 1035.4 1228 49.0
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 3.2e-280 969.1 1292 47.0
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 2.8e-268 929.5 694 71.2
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 5.7e-229 798.9 1105 43.6
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.2e-199 701.4 833 55.5
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 6.4e-196 689.1 537 72.6
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 6.4e-196 689.1 429 79.7
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 6.4e-188 662.5 537 69.5
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 7.1e-187 659.1 458 75.8
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 4.9e-164 583.2 680 54.0
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.3e-148 531.9 1201 33.6
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.5e-148 529.6 1228 34.6
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.0e-145 522.3 1288 32.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.9e-145 520.4 1239 33.6
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 4.2e-139 500.4 610 48.2
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 4.2e-131 473.8 1313 32.7
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.2e-130 472.2 1162 31.6
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.8e-116 424.1 1057 32.6
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.0e-104 385.2 1052 31.2
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 9.5e-99 366.3 1290 28.5
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 1.3e-87 329.3 332 57.2
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 5.8e-80 303.9 584 37.7
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 5.4e-78 297.4 247 63.6
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.7e-76 292.4 584 37.0
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.5e-46 192.2 217 52.5
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 4.2e-38 164.9 1213 25.1
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.3e-35 154.8 344 34.6
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.0e-31 143.7 1250 25.2
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.0e-28 133.7 129 55.8
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.0e-28 133.7 105 62.9
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 2.0e-27 129.4 140 54.3
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 2.6e-27 129.0 147 49.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.2e-22 112.1 187 37.4
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.0e-21 107.5 121 47.9
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.5e-19 103.2 191 37.2
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 8.2e-18 97.4 75 65.3
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 8.2e-18 97.4 61 78.7
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 5.3e-17 94.7 112 50.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 9.1e-17 94.0 78 64.1
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.1e-14 87.0 73 57.5
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 9.4e-14 84.0 71 57.7
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.6e-13 83.2 71 56.3
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 8.0e-13 80.9 59 66.1
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 8.0e-13 80.9 59 66.1
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 1.7e-10 73.2 76 51.3
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.1e-09 70.5 84 39.3
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 2.0e-08 66.2 76 51.3
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 3.8e-07 62.0 41 78.0
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 6.5e-07 61.2 49 61.2
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.1e-06 60.5 35 77.1
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 4.2e-06 58.5 36 75.0


User provided reference genes

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