Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.7e-67 258.5 124 100.0
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.3e-65 251.5 123 97.6
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 5.7e-25 117.9 121 53.7
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 6.3e-24 114.4 123 49.6
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.0e-22 109.4 121 50.4
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 5.9e-22 107.8 122 51.6
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.9e-21 105.5 119 49.6
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 6.5e-21 104.4 123 48.0
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 8.5e-21 104.0 126 48.4
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 2.5e-20 102.4 92 54.3
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 2.5e-20 102.4 92 54.3
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 7.2e-20 100.9 119 48.7
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.2e-19 100.1 118 45.8
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 8.0e-19 97.4 121 48.8
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-18 96.3 121 47.9
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.0e-18 95.5 90 54.4
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 4.0e-18 95.1 101 53.5
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 5.2e-18 94.7 118 50.0
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.8e-18 94.4 124 47.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 6.8e-18 94.4 125 47.2
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 8.8e-18 94.0 121 44.6
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 2.0e-17 92.8 120 45.8
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 2.6e-17 92.4 95 48.4
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 3.4e-17 92.0 119 47.9
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 5.7e-17 91.3 121 46.3
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 7.5e-17 90.9 95 51.6
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 7.5e-17 90.9 123 48.8
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 7.5e-17 90.9 101 51.5
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 1.7e-16 89.7 122 45.9
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.2e-16 89.4 118 44.9
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 3.7e-16 88.6 126 45.2
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 6.3e-16 87.8 118 47.5
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 8.3e-16 87.4 105 52.4
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 1.8e-15 86.3 109 48.6
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 3.1e-15 85.5 99 51.5
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.1e-15 85.1 94 51.1
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.0e-15 84.3 91 51.6
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-14 83.6 121 42.1
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.2e-14 83.6 101 50.5
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 1.6e-14 83.2 105 44.8
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.7e-14 82.4 91 50.5
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 4.5e-14 81.6 121 40.5
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 4.5e-14 81.6 121 40.5
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 7.7e-14 80.9 117 42.7
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.3e-13 80.1 115 41.7
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 2.9e-13 79.0 109 42.2
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 3.8e-13 78.6 83 51.8
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 3.8e-13 78.6 104 44.2
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 2.5e-12 75.9 78 48.7
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 3.2e-12 75.5 114 41.2
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 3.2e-12 75.5 104 41.3
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.2e-12 75.1 116 42.2
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 7.2e-12 74.3 122 38.5
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 7.2e-12 74.3 109 41.3
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 9.4e-12 73.9 95 49.5
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 9.4e-12 73.9 123 41.5
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.2e-11 73.6 121 38.8
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 1.2e-11 73.6 89 47.2
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 1.2e-11 73.6 87 44.8
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 1.6e-11 73.2 76 52.6
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.6e-11 73.2 115 40.0
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.6e-11 73.2 84 46.4
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 2.1e-11 72.8 83 50.6
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 2.7e-11 72.4 83 50.6
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.6e-11 72.0 121 35.5
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 6.1e-11 71.2 119 39.5
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 8.0e-11 70.9 115 40.9
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 1.0e-10 70.5 79 50.6
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.0e-10 70.5 79 50.6
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 1.0e-10 70.5 81 49.4
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.4e-10 70.1 115 42.6
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.3e-10 69.3 116 39.7
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 2.3e-10 69.3 95 42.1
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.3e-10 69.3 117 37.6
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 3.0e-10 68.9 116 37.9
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 4.0e-10 68.6 112 39.3
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 5.2e-10 68.2 93 41.9
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 8.8e-10 67.4 89 44.9
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 1.2e-09 67.0 112 38.4
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-09 67.0 114 40.4
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-09 67.0 114 40.4
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.2e-09 67.0 78 48.7
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.5e-09 66.6 88 42.0
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.5e-09 66.6 110 34.5
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.0e-09 66.2 119 39.5
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.0e-09 66.2 122 36.9
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 2.0e-09 66.2 79 49.4
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 2.6e-09 65.9 91 42.9
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 3.4e-09 65.5 115 38.3
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 3.4e-09 65.5 75 45.3
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 3.4e-09 65.5 114 38.6
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 5.7e-09 64.7 82 45.1
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.7e-09 64.7 71 49.3
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.7e-09 64.7 71 49.3
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.5e-09 64.3 79 48.1
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.3e-08 63.5 71 47.9
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.7e-08 63.2 83 44.6
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 1.7e-08 63.2 87 43.7
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 1.7e-08 63.2 104 35.6
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 2.2e-08 62.8 99 42.4
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 2.2e-08 62.8 93 41.9
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 2.2e-08 62.8 74 45.9
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 2.2e-08 62.8 107 38.3
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 2.8e-08 62.4 111 37.8
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.8e-08 62.4 120 36.7
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.7e-08 62.0 83 43.4
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.7e-08 62.0 83 43.4
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.7e-08 62.0 83 43.4
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 3.7e-08 62.0 76 42.1
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 4.9e-08 61.6 91 39.6
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 6.3e-08 61.2 83 43.4
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 6.3e-08 61.2 88 40.9
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 6.3e-08 61.2 79 48.1
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 8.3e-08 60.8 93 43.0
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.1e-07 60.5 79 43.0
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 1.4e-07 60.1 120 36.7
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.4e-07 60.1 79 41.8
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 1.8e-07 59.7 107 36.4
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 1.8e-07 59.7 85 42.4
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 2.4e-07 59.3 69 50.7
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 2.4e-07 59.3 77 45.5
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.4e-07 59.3 75 42.7
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 2.4e-07 59.3 81 43.2
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 2.4e-07 59.3 73 49.3
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 4.1e-07 58.5 83 41.0
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 4.1e-07 58.5 89 43.8
arahy.Tifrunner.gnm1.ann1.9450TA Arachis hypogaea HOM05D003277 ORTHO05D003275 5.4e-07 58.2 84 40.5
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 5.4e-07 58.2 78 43.6
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.0e-07 57.8 115 35.7
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.0e-07 57.8 121 36.4
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 7.0e-07 57.8 69 40.6
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 9.2e-07 57.4 114 31.6
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 1.2e-06 57.0 93 40.9
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 1.2e-06 57.0 73 47.9
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.6e-06 56.6 75 42.7
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.6e-06 56.6 75 42.7
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.6e-06 56.6 75 42.7
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 1.6e-06 56.6 72 45.8
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 1.6e-06 56.6 119 34.5
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 1.6e-06 56.6 74 44.6
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.0e-06 56.2 69 36.2
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.0e-06 56.2 78 43.6
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.0e-06 56.2 68 47.1
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 2.0e-06 56.2 80 45.0
Carub.0003s1575 Capsella rubella HOM05D015723 ORTHO05D003275 2.7e-06 55.8 112 37.5
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 3.5e-06 55.5 88 38.6
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 3.5e-06 55.5 68 48.5
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 4.5e-06 55.1 73 43.8
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 5.9e-06 54.7 75 46.7
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 5.9e-06 54.7 74 39.2
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 5.9e-06 54.7 67 44.8
RcHm_v2.0_Chr2g0090671 Rosa chinensis HOM05D003277 ORTHO05D003275 5.9e-06 54.7 57 54.4
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.7e-06 54.3 68 50.0


User provided reference genes

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