Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 9.1e-57 223.4 117 100.0
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 9.1e-57 223.4 117 100.0
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.3e-55 219.5 117 96.6
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 3.8e-55 218.0 117 95.7
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 8.5e-55 216.9 117 95.7
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.5e-54 216.1 117 95.7
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.9e-54 215.7 117 94.9
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.9e-54 215.7 117 94.9
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.5e-54 215.3 117 94.0
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 7.2e-54 213.8 117 94.9
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 9.4e-54 213.4 117 93.2
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.6e-53 212.6 117 93.2
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 2.1e-53 212.2 118 94.9
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 2.7e-53 211.8 117 93.2
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 6.1e-53 210.7 113 94.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 8.0e-53 210.3 117 93.2
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 8.0e-53 210.3 117 90.6
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 91.5
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 91.5
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 91.5
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 1.8e-52 209.1 117 91.5
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.0e-52 208.4 118 93.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 4.0e-52 208.0 117 91.5
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 5.2e-52 207.6 117 91.5
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.2e-51 206.5 118 92.4
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 1.2e-51 206.5 118 92.4
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.5e-51 206.1 113 92.0
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.5e-51 206.1 112 92.9
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 2.0e-51 205.7 114 92.1
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.0e-51 205.7 113 92.0
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 2.0e-51 205.7 119 91.6
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.0e-51 205.7 113 92.9
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 3.3e-51 204.9 118 90.7
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 4.4e-51 204.5 119 90.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 4.4e-51 204.5 113 93.8
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.4e-51 204.5 117 88.0
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.4e-51 204.5 117 88.0
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 4.4e-51 204.5 117 88.0
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 92.0
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 9.7e-51 203.4 118 91.5
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.9
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.3e-50 203.0 118 89.8
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 1.7e-50 202.6 114 91.2
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.7e-50 202.6 113 92.0
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 92.0
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.2e-50 202.2 118 89.8
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 114 90.4
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 114 90.4
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 114 90.4
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 2.2e-50 202.2 120 90.0
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 92.0
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 92.0
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 3.7e-50 201.4 118 89.0
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 3.7e-50 201.4 114 91.2
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 92.0
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.7e-50 201.4 117 85.5
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 92.0
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 91.2
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 91.2
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 90.3
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 91.2
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 4.8e-50 201.1 120 90.0
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 92.9
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 6.3e-50 200.7 113 92.0
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.1e-49 199.9 117 87.2
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 91.2
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 90.3
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 89.5
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 88.6
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 90.3
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 91.2
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 91.2
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 90.3
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 90.3
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.8e-49 199.1 114 91.2
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.8e-49 199.1 114 91.2
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.8e-49 199.1 114 91.2
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 91.2
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 90.3
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 90.3
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 90.3
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 91.2
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.1e-49 198.4 117 87.2
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.1e-49 198.4 114 88.6
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 89.4
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 89.4
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 89.4
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 89.4
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 89.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 89.4
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 89.4
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 7.0e-49 197.2 110 93.6
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 9.1e-49 196.8 113 89.4
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 9.1e-49 196.8 113 87.6
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.1e-49 196.8 114 89.5
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.1e-49 196.8 114 89.5
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.2e-48 196.4 117 87.2
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 89.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 1.6e-48 196.1 120 86.7
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.7e-48 195.3 114 88.6
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 88.5
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 4.5e-48 194.5 114 89.5
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 4.5e-48 194.5 114 89.5
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.3e-47 193.0 117 83.8
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.3e-47 193.0 114 87.7
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 1.7e-47 192.6 111 89.2
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.7e-47 192.6 110 89.1
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 2.2e-47 192.2 113 85.0
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.9e-47 191.8 113 87.6
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 3.8e-47 191.4 111 87.4
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.8e-47 191.4 114 82.5
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 8.5e-47 190.3 117 84.6
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.1e-46 189.9 118 84.7
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.5e-46 188.7 113 84.1
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 3.2e-46 188.3 105 91.4
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 4.2e-46 188.0 110 87.3
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 85.8
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 5.5e-46 187.6 111 86.5
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 83.2
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 85.8
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 1.6e-45 186.0 149 71.1
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.0e-44 183.3 127 78.7
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.4e-44 183.0 113 83.2
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.8e-44 182.6 109 83.5
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 5.2e-44 181.0 113 82.3
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 5.2e-44 181.0 117 76.9
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 7.5e-43 177.2 114 73.7
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.4e-41 171.0 178 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 8.6e-39 163.7 107 74.8
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.6e-39 163.7 122 77.9
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.9e-38 162.5 89 87.6
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 2.5e-38 162.2 197 51.8
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.8e-37 158.7 88 90.9
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.8e-34 148.7 86 89.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 6.3e-34 147.5 85 89.4
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 6.3e-34 147.5 85 89.4
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.1e-33 146.7 85 87.1
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 9.2e-33 143.7 99 77.8
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 1.2e-32 143.3 81 87.7
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.2e-32 143.3 86 82.6
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 5.9e-32 141.0 72 91.7
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.0e-31 140.2 82 86.6
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 2.9e-31 138.7 73 93.2
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 3.3e-30 135.2 105 71.4
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 3.3e-30 135.2 105 71.4
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 8.0e-29 130.6 67 94.0
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 9.8e-27 123.6 109 57.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.9e-25 119.4 80 81.2
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.4e-25 119.0 70 90.0
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 9.2e-25 117.1 105 50.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.2e-24 116.7 74 87.8
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.3e-23 113.2 83 75.9
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.3e-23 113.2 71 84.5
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.8e-20 102.8 72 70.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-19 100.1 104 60.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.7e-15 86.3 47 87.2
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 3.4e-11 72.0 48 79.2
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 3.7e-10 68.6 43 83.7
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 1.4e-09 66.6 41 85.4
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 1.4e-09 66.6 41 85.4
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 3.5e-08 62.0 59 66.1
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 7.8e-08 60.8 42 78.6
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.3e-07 60.1 42 81.0


User provided reference genes

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