Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 1.5e-97 359.4 165 100.0
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.3e-21 107.1 174 34.5
FvH4_2g05763 Fragaria vesca HOM05D000003 ORTHO05D000004 7.4e-20 101.3 159 32.7
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.1e-19 97.8 167 34.1
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 3.1e-18 95.9 176 31.2
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.0e-18 94.4 145 33.8
Rhsim04G0047200 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.7e-16 90.1 88 43.2
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-16 89.4 171 29.2
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 3.8e-16 89.0 171 31.6
COL.COLO4_18924 Corchorus olitorius HOM05D000003 ORTHO05D009449 6.4e-16 88.2 155 32.9
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-15 87.0 174 31.6
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-15 86.7 162 32.1
COL.COLO4_22232 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.9e-15 86.7 177 27.7
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 2.4e-15 86.3 173 27.7
Rhsim06G0091800 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.4e-15 86.3 162 29.0
COL.COLO4_35856 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.2e-15 85.5 176 24.4
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.5e-15 85.1 171 27.5
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 9.3e-15 84.3 171 27.5
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 1.6e-14 83.6 176 29.5
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.0e-13 79.3 141 32.6
Aqoxy4G01593 Aquilegia oxysepala HOM05D000003 ORTHO05D018399 8.7e-13 77.8 164 28.7
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 1.9e-12 76.6 146 26.7
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 3.3e-12 75.9 155 27.7
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 3.3e-12 75.9 180 28.9
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 4.3e-12 75.5 182 28.6
Rhsim01G0199300 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.3e-12 75.5 130 31.5
PSO782G5746 Papaver somniferum HOM05D000003 ORTHO05D000004 5.6e-12 75.1 146 29.5
vmacro06901 Vaccinium macrocarpon HOM05D004933 ORTHO05D005465 5.6e-12 75.1 175 30.3
FvH4_5g31282 Fragaria vesca HOM05D000003 ORTHO05D000004 7.4e-12 74.7 145 29.7
PSO017G1014 Papaver somniferum HOM05D000003 ORTHO05D001026 9.6e-12 74.3 152 28.3
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.6e-11 73.6 159 27.7
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 1.6e-11 73.6 181 23.8
CANSAT21G1260 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-11 73.2 170 26.5
CANSAT25G3211 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-11 73.2 169 26.6
CANSAT35G0312 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-11 73.2 170 25.9
FvH4_5g35622 Fragaria vesca HOM05D000003 ORTHO05D014221 2.1e-11 73.2 152 26.3
RcHm_v2.0_Chr1g0334101 Rosa chinensis HOM05D000005 ORTHO05D000012 2.1e-11 73.2 113 31.9
PSO170G5434 Papaver somniferum HOM05D007919 ORTHO05D006738 4.8e-11 72.0 160 28.1
COL.COLO4_07290 Corchorus olitorius HOM05D000003 ORTHO05D000004 6.2e-11 71.6 77 37.7
Lj3g0008362 Lotus japonicus HOM05D000003 ORTHO05D000004 6.2e-11 71.6 153 30.1
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.2e-11 71.6 126 31.7
Lj6g0001178 Lotus japonicus HOM05D000003 ORTHO05D000004 8.1e-11 71.2 164 26.2
Rhsim09G0146400 Rhododendron simsii HOM05D008183 ORTHO05D007254 8.1e-11 71.2 126 31.7
TAR273G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 8.1e-11 71.2 153 30.7
Aa31LG9G1250 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-10 70.9 176 28.4
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 1.4e-10 70.5 94 37.2
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.8e-10 70.1 133 30.8
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.4e-10 69.7 107 33.6
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 2.4e-10 69.7 163 25.2
FvH4_7g06171 Fragaria vesca HOM05D000003 ORTHO05D000006 2.4e-10 69.7 169 26.6
FvH4_4g05481 Fragaria vesca HOM05D008133 ORTHO05D009449 3.1e-10 69.3 238 22.3
Lj5g0017569 Lotus japonicus HOM05D000003 ORTHO05D007254 3.1e-10 69.3 169 23.7
PSO210G7487 Papaver somniferum HOM05D000003 ORTHO05D000004 3.1e-10 69.3 136 27.9
PSO170G6566 Papaver somniferum HOM05D000003 ORTHO05D001026 4.0e-10 68.9 152 27.6
Aqoxy6G02267 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.3e-10 68.6 180 26.1
Lj5g0002145 Lotus japonicus HOM05D000003 ORTHO05D000167 5.3e-10 68.6 163 28.2
PSO541G3346 Papaver somniferum HOM05D000003 ORTHO05D001026 5.3e-10 68.6 160 26.2
PSO675G8709 Papaver somniferum HOM05D000003 ORTHO05D000004 5.3e-10 68.6 168 25.6
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 5.3e-10 68.6 176 26.1
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 5.3e-10 68.6 159 28.3
PSO782G0858 Papaver somniferum HOM05D000003 ORTHO05D001026 6.9e-10 68.2 155 27.1
Lj4g0009536 Lotus japonicus HOM05D000003 ORTHO05D000004 9.0e-10 67.8 150 29.3
CANSAT78G0894 Cannabis sativa HOM05D000003 ORTHO05D000167 2.0e-09 66.6 164 26.2
PSO063G1644 Papaver somniferum HOM05D003407 ORTHO05D001026 2.0e-09 66.6 171 27.5
Prupe.6G087800 Prunus persica HOM05D000003 ORTHO05D000004 2.6e-09 66.2 82 34.1
PSO425G0063 Papaver somniferum HOM05D000003 ORTHO05D001026 3.4e-09 65.9 158 27.2
PSO765G0056 Papaver somniferum HOM05D000003 ORTHO05D001026 3.4e-09 65.9 151 29.1
CiPaw.05G068400 Carya illinoinensis HOM05D000003 ORTHO05D000004 4.5e-09 65.5 152 27.0
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 4.5e-09 65.5 155 23.9
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 4.5e-09 65.5 177 26.6
PSO447G0315 Papaver somniferum HOM05D000003 ORTHO05D001026 4.5e-09 65.5 136 26.5
PSO541G0547 Papaver somniferum HOM05D000003 ORTHO05D001026 4.5e-09 65.5 147 27.9
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-09 64.7 177 22.0
Lj3g0020321 Lotus japonicus HOM05D000003 ORTHO05D000126 7.6e-09 64.7 180 27.8
Lj4g0019340 Lotus japonicus HOM05D000003 ORTHO05D000126 7.6e-09 64.7 180 27.8
PSO675G7410 Papaver somniferum HOM05D000003 ORTHO05D001026 7.6e-09 64.7 156 22.4
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 1.0e-08 64.3 178 21.9
PSO063G6559 Papaver somniferum HOM05D000003 ORTHO05D000004 1.0e-08 64.3 168 27.4
Prupe.2G060500 Prunus persica HOM05D000003 ORTHO05D000004 1.0e-08 64.3 82 32.9
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-08 63.9 175 24.0
COL.COLO4_22747 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.3e-08 63.9 92 31.5
PSO339G4796 Papaver somniferum HOM05D007919 ORTHO05D006738 1.3e-08 63.9 161 26.1
PSO528G0097 Papaver somniferum HOM05D007919 ORTHO05D006738 1.3e-08 63.9 159 25.8
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.3e-08 63.9 138 29.0
CANSAT78G1445 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-08 63.2 157 26.8
COL.COLO4_38392 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.2e-08 63.2 154 26.6
Prupe.1G283700 Prunus persica HOM05D008133 ORTHO05D009449 2.2e-08 63.2 97 28.9
COL.COLO4_15233 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.9e-08 62.8 92 30.4
PSO675G0069 Papaver somniferum HOM05D000003 ORTHO05D001026 2.9e-08 62.8 156 24.4
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.9e-08 62.8 77 33.8
Prupe.8G042700 Prunus persica HOM05D000003 ORTHO05D009449 4.9e-08 62.0 174 20.7
CANSAT80G0435 Cannabis sativa HOM05D000003 ORTHO05D000167 6.5e-08 61.6 168 25.6
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 8.4e-08 61.2 109 35.8
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 8.4e-08 61.2 135 27.4
Atru.chr9.1187 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-07 60.8 151 25.8
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.8 164 24.4
PSO541G1607 Papaver somniferum HOM05D000003 ORTHO05D001026 1.1e-07 60.8 153 22.9
PSO837G0074 Papaver somniferum HOM05D000003 ORTHO05D001026 1.1e-07 60.8 152 24.3
Aa31sc85G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-07 60.5 143 30.1
PSO063G7282 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-07 60.5 157 25.5
PSO782G5323 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-07 60.5 148 23.0
CANSAT78G2409 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 60.1 158 27.8
PSO210G7023 Papaver somniferum HOM05D003407 ORTHO05D001026 1.9e-07 60.1 156 25.6
CANSAT35G1149 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-07 59.7 156 27.6
CANSAT78G2359 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-07 59.7 156 24.4
PSO339G5115 Papaver somniferum HOM05D000003 ORTHO05D000004 2.5e-07 59.7 149 25.5
Aqoxy4G02038 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 3.2e-07 59.3 147 26.5
Aqoxy6G01520 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.2e-07 59.3 157 28.0
CANSAT21G2025 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-07 59.3 158 26.6
Atru.chr2.915 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-07 58.9 90 31.1
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.2e-07 58.9 43 62.8
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.2e-07 58.9 43 65.1
CANSAT25G2489 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-07 58.9 136 26.5
PSO478G0500 Papaver somniferum HOM05D000003 ORTHO05D001026 4.2e-07 58.9 154 26.6
Atru.chr10.59 Acer truncatum HOM05D000003 ORTHO05D002259 5.5e-07 58.5 82 30.5
PSO170G5422 Papaver somniferum HOM05D007919 ORTHO05D006738 5.5e-07 58.5 159 26.4
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 7.1e-07 58.2 185 24.3
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 7.1e-07 58.2 178 22.5
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.1e-07 58.2 43 62.8
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.1e-07 58.2 43 62.8
PSO339G4202 Papaver somniferum HOM05D000003 ORTHO05D006738 7.1e-07 58.2 159 25.2
PSO782G4810 Papaver somniferum HOM05D007919 ORTHO05D006738 7.1e-07 58.2 157 27.4
Ah.12g061120 Amaranthus hybridus HOM05D000003 ORTHO05D000167 9.3e-07 57.8 152 27.6
CSS0014976 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.3e-07 57.8 86 31.4
PSO170G1515 Papaver somniferum HOM05D000003 ORTHO05D001026 9.3e-07 57.8 149 23.5
PSO478G0556 Papaver somniferum HOM05D007919 ORTHO05D006738 9.3e-07 57.8 137 27.0
BcaC09g49873 Brassica carinata HOM05D000003 ORTHO05D000004 1.2e-06 57.4 171 26.9
CANSAT11G1919 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-06 57.4 136 26.5
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.4 163 21.5
Duzib213G0982 Durio zibethinus HOM05D008133 ORTHO05D007254 1.2e-06 57.4 163 25.2
LjContig00141g0007313 Lotus japonicus HOM05D000003 ORTHO05D000004 1.2e-06 57.4 98 31.6
BolC1t04159H Brassica oleracea HOM05D000003 ORTHO05D011793 1.6e-06 57.0 163 23.9
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.1e-06 56.6 43 62.8
FvH4_2g11841 Fragaria vesca HOM05D000003 ORTHO05D000004 2.1e-06 56.6 139 25.9
PSO357G0561 Papaver somniferum HOM05D000003 ORTHO05D001026 2.1e-06 56.6 92 29.3
Aqoxy4G01300 Aquilegia oxysepala HOM05D009330 ORTHO05D001026 2.7e-06 56.2 162 24.1
BcaB01g00479 Brassica carinata HOM05D000003 ORTHO05D004851 2.7e-06 56.2 160 28.8
BcaB08g35448 Brassica carinata HOM05D000003 ORTHO05D001498 2.7e-06 56.2 84 35.7
CANSAT21G2469 Cannabis sativa HOM05D000003 ORTHO05D009135 2.7e-06 56.2 131 26.0
CANSAT56G3271 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-06 56.2 162 23.5
Atru.chr1.2712 Acer truncatum HOM05D000003 ORTHO05D000167 3.5e-06 55.8 170 25.9
Aa31LG1G4840 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.5e-06 55.8 88 33.0
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.5e-06 55.8 43 60.5
QL02p102610 Quercus lobata HOM05D008417 ORTHO05D010741 3.5e-06 55.8 92 27.2
TAR351G0004 Trochodendron aralioides HOM05D000003 ORTHO05D009135 3.5e-06 55.8 154 28.6
BcaC01g01267 Brassica carinata HOM05D000003 ORTHO05D001498 4.6e-06 55.5 159 26.4
BolC3t21319H Brassica oleracea HOM05D000003 ORTHO05D001498 4.6e-06 55.5 159 26.4
PSO017G3839 Papaver somniferum HOM05D007919 ORTHO05D006738 4.6e-06 55.5 160 26.2
PSO170G4686 Papaver somniferum HOM05D000003 ORTHO05D001026 4.6e-06 55.5 109 25.7
PSO339G4616 Papaver somniferum HOM05D000003 ORTHO05D001026 4.6e-06 55.5 93 30.1
PSO478G2529 Papaver somniferum HOM05D000003 ORTHO05D001026 4.6e-06 55.5 94 31.9
Phvul.002G171400 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 4.6e-06 55.5 89 25.8
QL03p072831 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-06 55.5 77 32.5
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-06 55.1 164 22.0
Prupe.8G032200 Prunus persica HOM05D000003 ORTHO05D000004 6.0e-06 55.1 178 22.5
Lj4C842T3 Lonicera japonica HOM05D000003 ORTHO05D000167 7.9e-06 54.7 168 26.8
Lj5g0015732 Lotus japonicus HOM05D000003 ORTHO05D000004 7.9e-06 54.7 78 34.6


User provided reference genes

Program Settings