Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-110 401.7 196 100.0
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.5e-99 364.4 194 93.8
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.3e-92 342.4 194 87.6
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.9e-92 342.0 194 87.6
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 6.1e-90 334.3 194 84.5
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.8e-89 332.8 194 86.1
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 9.2e-86 320.5 194 80.4
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.9e-84 315.5 194 78.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 5.0e-84 314.7 194 79.9
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 5.0e-84 314.7 194 78.4
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 8.6e-84 313.9 194 78.4
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 8.6e-84 313.9 194 79.4
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.5e-83 313.2 194 78.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.3e-83 312.0 194 76.8
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 4.3e-83 311.6 193 78.2
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 7.3e-83 310.8 194 78.4
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.2e-82 310.1 194 77.3
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 3.6e-82 308.5 194 76.3
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 3.6e-82 308.5 194 78.4
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.0e-81 307.0 194 77.3
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.0e-81 307.0 193 78.2
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.4e-81 306.6 194 76.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.4e-81 306.6 194 76.3
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.4e-81 306.6 193 76.2
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 2.3e-81 305.8 193 75.1
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.3e-81 305.8 194 76.8
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 2.3e-81 305.8 194 75.8
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.0e-81 305.1 193 77.2
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 5.2e-81 304.7 193 77.7
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 6.8e-81 304.3 193 74.6
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 8.9e-81 303.9 194 75.3
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.2e-80 303.5 195 75.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.2e-80 303.5 194 78.9
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.5e-80 303.1 193 76.7
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.5e-80 303.1 192 76.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.5e-80 303.1 194 78.4
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 2.0e-80 302.8 194 74.2
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 4.4e-80 301.6 194 76.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.8e-80 301.2 193 75.6
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 7.5e-80 300.8 194 76.3
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.5e-80 300.8 193 75.6
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 9.8e-80 300.4 194 76.3
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 9.8e-80 300.4 194 75.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.3e-79 300.1 195 76.4
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.7e-79 299.7 194 77.3
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 2.2e-79 299.3 193 74.6
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.9e-79 298.9 192 75.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 2.9e-79 298.9 193 75.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.9e-79 298.1 194 75.3
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 4.9e-79 298.1 193 74.1
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 6.4e-79 297.7 194 76.3
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 8.3e-79 297.4 194 73.7
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.4e-78 296.6 195 75.4
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-78 296.6 195 75.4
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.4e-78 296.6 193 75.1
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.9e-78 296.2 194 74.7
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.2e-78 295.4 195 75.4
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 7.0e-78 294.3 193 73.6
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 9.2e-78 293.9 195 74.9
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 9.2e-78 293.9 193 74.6
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 9.2e-78 293.9 195 74.9
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 9.2e-78 293.9 191 74.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.2e-77 293.5 193 72.0
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.6e-77 293.1 195 74.9
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.6e-77 293.1 193 73.6
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.6e-77 293.1 193 74.1
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 2.7e-77 292.4 193 73.1
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.7e-77 292.4 193 73.6
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 4.6e-77 291.6 194 73.7
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 2.3e-76 289.3 193 72.0
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 3.9e-76 288.5 195 75.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-75 287.0 194 78.9
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.5e-75 286.6 194 74.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.5e-75 286.6 194 71.6
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.5e-75 286.6 194 70.6
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.9e-75 286.2 194 74.2
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 4.3e-75 285.0 194 71.1
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.6e-75 284.6 188 74.5
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 9.5e-75 283.9 194 72.2
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.1e-74 282.7 194 70.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 2.1e-74 282.7 175 78.9
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.8e-74 282.3 194 70.6
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 6.2e-74 281.2 194 71.6
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 8.0e-74 280.8 194 69.6
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.4e-73 280.0 196 70.9
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 1.4e-73 280.0 195 73.3
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 3.1e-73 278.9 194 69.6
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 3.1e-73 278.9 194 69.1
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.1e-73 278.9 181 76.2
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 4.0e-73 278.5 176 75.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 4.0e-73 278.5 193 71.0
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.8e-73 277.7 196 70.4
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.2e-72 276.9 194 71.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 2.0e-72 276.2 194 68.6
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 2.0e-72 276.2 194 69.1
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.0e-72 276.2 194 71.1
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.6e-72 275.8 196 69.9
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.4e-72 275.4 194 70.6
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 4.4e-72 275.0 193 68.9
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 7.5e-72 274.2 195 68.7
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.7e-71 273.1 192 68.2
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.7e-71 273.1 194 70.1
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.2e-71 272.7 193 69.4
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.9e-71 272.3 194 69.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.7e-71 271.9 192 68.8
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.7e-71 271.9 193 68.9
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 4.9e-71 271.6 194 69.1
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 8.3e-71 270.8 192 67.7
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.1e-70 270.4 196 69.9
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.4e-70 269.2 195 69.7
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 4.1e-70 268.5 194 69.1
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 4.1e-70 268.5 194 69.6
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 7.0e-70 267.7 194 67.0
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.2e-69 266.9 194 67.0
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.1e-69 266.2 194 69.6
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.6e-69 265.0 197 68.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 2.3e-68 262.7 195 66.2
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 3.0e-68 262.3 145 86.2
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 6.6e-68 261.2 210 63.8
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-67 260.4 194 67.5
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 8.1e-66 254.2 177 68.9
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 5.2e-65 251.5 175 67.4
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.4e-64 248.8 194 66.0
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.5e-64 247.7 194 64.4
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 2.9e-63 245.7 151 80.1
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 4.9e-63 245.0 157 77.1
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 8.3e-63 244.2 167 71.3
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 6.0e-61 238.0 176 67.0
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.5e-59 233.4 142 76.8
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-59 233.0 193 62.2
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.1e-58 229.6 154 73.4
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 8.9e-57 224.2 150 72.0
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 3.0e-52 209.1 222 52.7
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.0e-52 209.1 191 56.0
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.9e-52 208.8 120 80.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 7.3e-51 204.5 194 56.7
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.8e-49 199.9 200 49.5
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 2.0e-48 196.4 188 53.7
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.4e-46 190.3 175 54.3
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 3.2e-46 189.1 199 52.3
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.2e-45 187.2 194 52.1
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-44 183.7 121 71.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 3.3e-43 179.1 191 48.7
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.8e-42 175.3 154 61.0
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 3.4e-40 169.1 111 75.7
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 6.2e-34 148.3 93 74.2
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.1e-34 147.9 193 45.6
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.4e-33 146.4 111 64.9
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 9.0e-33 144.4 149 54.4
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 4.9e-31 138.7 89 70.8
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 2.0e-24 116.7 193 39.9
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.2e-23 113.2 64 82.8
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.3e-20 104.0 134 40.3
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.6e-18 97.1 72 68.1
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.8e-18 96.3 80 66.2
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 8.2e-18 94.7 171 31.6
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 6.3e-10 68.6 172 30.2
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 7.7e-08 61.6 42 64.3
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.3e-07 60.8 38 65.8
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.7e-07 60.5 42 64.3
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.9e-07 59.7 44 59.1
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.8e-07 59.3 56 50.0
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.9e-06 57.0 34 79.4
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 7.2e-06 55.1 108 29.6


User provided reference genes

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