Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 3.9e-199 698.0 359 100.0
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 8.6e-199 696.8 359 99.7
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 2.1e-168 595.9 359 82.7
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 3.0e-167 592.0 359 82.2
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 5.1e-167 591.3 359 84.4
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 2.2e-162 575.9 360 82.5
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 4.9e-162 574.7 359 80.5
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 1.1e-161 573.5 359 80.2
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 1.6e-160 569.7 359 79.7
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 2.1e-160 569.3 359 81.1
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 2.7e-160 568.9 359 79.4
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.7e-160 568.9 359 78.3
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 2.7e-160 568.9 346 85.8
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 3.5e-160 568.5 359 78.3
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 3.5e-160 568.5 359 78.3
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 1.0e-159 567.0 359 80.8
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 7.4e-158 560.8 359 79.7
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 3.7e-157 558.5 359 79.4
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 3.7e-157 558.5 359 79.4
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 1.1e-156 557.0 359 78.0
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 1.1e-156 557.0 359 78.3
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 1.4e-156 556.6 360 78.3
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 6.9e-156 554.3 359 77.4
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 1.5e-155 553.1 359 76.9
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 2.0e-155 552.7 361 76.2
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 2.6e-155 552.4 361 76.5
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 3.8e-154 548.5 362 79.6
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 6.5e-154 547.7 359 76.3
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 1.4e-153 546.6 359 77.4
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 3.2e-153 545.4 359 74.9
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 4.2e-153 545.0 323 81.4
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 7.1e-153 544.3 359 76.9
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 6.0e-152 541.2 359 77.2
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 3.9e-151 538.5 359 75.2
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 1.1e-150 537.0 359 74.1
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 1.1e-150 537.0 378 72.8
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 4.3e-150 535.0 361 74.5
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 5.7e-150 534.6 359 73.5
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 4.8e-149 531.6 359 72.1
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 8.2e-149 530.8 410 67.1
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 1.4e-148 530.0 379 71.5
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 5.3e-148 528.1 360 74.7
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 1.2e-147 526.9 350 76.3
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 2.0e-147 526.2 350 76.9
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 2.6e-147 525.8 360 73.6
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 3.4e-147 525.4 350 76.3
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 2.5e-145 519.2 357 71.7
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 7.2e-145 517.7 353 73.1
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 1.6e-144 516.5 351 73.8
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 1.6e-144 516.5 351 73.8
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 3.6e-144 515.4 405 68.4
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 4.6e-144 515.0 350 73.7
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 7.9e-144 514.2 370 71.4
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 3.0e-143 512.3 351 73.2
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 3.9e-143 511.9 351 74.9
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 1.1e-142 510.4 351 72.9
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 1.1e-142 510.4 350 73.1
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 1.5e-142 510.0 345 73.6
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 1.5e-142 510.0 352 71.3
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 5.7e-142 508.1 327 77.4
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 9.7e-142 507.3 351 72.1
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 4.8e-141 505.0 351 72.9
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 8.2e-141 504.2 363 69.7
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 1.4e-140 503.4 359 71.6
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 2.4e-140 502.7 368 69.8
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 5.7e-134 481.5 378 69.3
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 1.2e-131 473.8 347 66.9
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 4.5e-131 471.9 347 70.6
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 1.3e-130 470.3 358 69.3
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 1.9e-129 466.5 349 64.8
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 2.6e-126 456.1 313 74.1
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 3.3e-126 455.7 359 64.3
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 8.2e-125 451.1 345 62.9
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 2.0e-123 446.4 346 64.7
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 3.5e-123 445.7 322 72.4
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 3.8e-122 442.2 322 72.7
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 5.5e-121 438.3 343 65.6
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 2.2e-114 416.4 323 66.6
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 8.5e-114 414.5 429 54.5
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 2.5e-113 412.9 362 64.1
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 2.0e-110 403.3 252 81.7
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.3e-109 400.6 384 58.9
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 3.1e-108 396.0 378 57.1
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.0e-106 391.0 396 55.3
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 1.7e-101 373.6 384 56.2
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 2.9e-98 362.8 260 70.4
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 1.1e-97 360.9 367 55.9
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 3.5e-91 339.3 289 65.7
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 6.0e-91 338.6 357 49.9
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 1.9e-84 317.0 323 46.7
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 9.2e-84 314.7 167 91.0
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 1.7e-82 310.5 246 63.8
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 2.1e-75 287.0 167 79.6
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 1.5e-73 280.8 172 79.1
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 9.5e-73 278.1 194 75.3
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 9.9e-70 268.1 175 80.6
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 1.7e-69 267.3 175 78.3
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 4.9e-69 265.8 175 77.7
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 5.6e-65 252.3 170 70.0
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.1e-64 250.4 240 56.2
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 8.1e-64 248.4 179 74.3
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 3.4e-62 243.0 182 67.0
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 2.9e-61 240.0 307 42.0
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 3.0e-58 229.9 158 71.5
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 8.1e-56 221.9 123 83.7
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 4.0e-55 219.5 172 67.4
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 2.4e-47 193.7 108 84.3
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 3.4e-46 189.9 212 53.3
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 1.2e-43 181.4 112 74.1
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 3.9e-42 176.4 131 65.6
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 5.1e-42 176.0 124 64.5
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.5e-38 164.5 140 60.0
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 3.8e-37 159.8 94 77.7
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 3.2e-36 156.8 124 61.3
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 4.2e-36 156.4 91 81.3
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 1.6e-35 154.5 105 71.4
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 4.6e-35 152.9 345 29.9
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 1.5e-33 147.9 148 55.4
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 2.0e-30 137.5 115 60.0
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 3.8e-29 133.3 82 81.7
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 3.2e-28 130.2 102 63.7
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 1.4e-26 124.8 75 72.0
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 3.7e-24 116.7 121 43.0
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 2.4e-23 114.0 78 74.4
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 9.1e-23 112.1 79 70.9
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 1.7e-21 107.8 112 56.2
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 8.5e-21 105.5 225 30.7
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 1.9e-20 104.4 73 71.2
CiPaw.03G033500 Carya illinoinensis HOM05D006555 ORTHO05D008376 2.9e-13 80.5 240 26.2
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 3.8e-13 80.1 339 24.2
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 5.0e-13 79.7 343 25.9
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 5.0e-13 79.7 317 26.5
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 4.2e-12 76.6 328 23.2
FAN02G0929 Fragaria x ananassa HOM05D006555 ORTHO05D008376 5.5e-12 76.3 247 25.1
FAN05G5565 Fragaria x ananassa HOM05D006555 ORTHO05D008376 5.5e-12 76.3 323 24.1
MSTRG.3197 Avicennia marina HOM05D006555 ORTHO05D008376 7.2e-12 75.9 235 26.4
FvH4_6g49950 Fragaria vesca HOM05D006555 ORTHO05D008376 9.4e-12 75.5 317 23.7
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 2.1e-11 74.3 306 24.8
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 3.6e-11 73.6 314 24.2
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 6.1e-11 72.8 314 23.6
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 6.1e-11 72.8 148 30.4
AUR62005932 Chenopodium quinoa HOM05D006555 ORTHO05D008376 5.2e-10 69.7 235 25.5
AUR62005935 Chenopodium quinoa HOM05D006555 ORTHO05D008376 5.2e-10 69.7 235 25.5
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 5.2e-10 69.7 242 24.4
Thecc.04G067100 Theobroma cacao HOM05D006555 ORTHO05D008376 5.2e-10 69.7 309 24.3
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 9.7e-09 65.5 242 25.6
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 2.2e-08 64.3 316 24.4
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 2.8e-08 63.9 246 25.2
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 1.4e-07 61.6 52 59.6
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 9.1e-07 58.9 222 26.1
VMungo0251G3141 Vigna mungo HOM05D006555 ORTHO05D008376 3.5e-06 57.0 314 23.9
Phvul.002G176300 Phaseolus vulgaris HOM05D006555 ORTHO05D008376 5.9e-06 56.2 233 23.2


User provided reference genes

Program Settings